The Y chromosome sequence of the channel catfish suggests novel sex determination mechanisms in teleost fish

The Colorful Sex Chromosomes of Teleost Fish

(2018) Verena Kottler et al.   Genes

Fast and accurate de novo genome assembly from long uncorrected reads

(2017) Robert Vaser et al.   GENOME RESEARCH

Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation

(2017) Sergey Koren et al.   GENOME RESEARCH

Genome editing reveals dmrt1 as an essential male sex-determining gene in Chinese tongue sole (Cynoglossus semilaevis)

(2017) Zhongkai Cui et al.   Scientific Reports

Development of a 690 K SNP array in catfish and its application for genetic mapping and validation of the reference genome sequence

(2017) Qifan Zeng et al.   Scientific Reports

Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences

(2016) Heng Li   BIOINFORMATICS

A time- and cost-effective strategy to sequence mammalian Y Chromosomes: an application to the de novo assembly of gorilla Y

(2016) Marta Tomaszkiewicz et al.   GENOME RESEARCH

The channel catfish genome sequence provides insights into the evolution of scale formation in teleosts

(2016) Zhanjiang Liu et al.   Nature Communications

Chromosomer: a reference-based genome arrangement tool for producing draft chromosome sequences

(2016) Gaik Tamazian et al.   GigaScience

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Lasting effects of early exposure to temperature on the gonadal transcriptome at the time of sex differentiation in the European sea bass, a fish with mixed genetic and environmental sex determination

(2015) Noelia Díaz et al.   BMC GENOMICS

The pig X and Y Chromosomes: structure, sequence, and evolution

(2015) Benjamin M. Skinner et al.   GENOME RESEARCH

A recent bottleneck of Y chromosome diversity coincides with a global change in culture

(2015) Monika Karmin et al.   GENOME RESEARCH

Sequencing the Mouse Y Chromosome Reveals Convergent Gene Acquisition and Amplification on Both Sex Chromosomes

(2014) Y.Q. Shirleen Soh et al.   CELL

Construction of a high-density, high-resolution genetic map and its integration with BAC-based physical map in channel catfish

(2014) Y. Li et al.   DNA RESEARCH

Epigenetic modification and inheritance in sexual reversal of fish

(2014) C. Shao et al.   GENOME RESEARCH

Molecular Method for Sex Identification of Half-Smooth Tongue Sole (Cynoglossus semilaevis) Using a Novel Sex-Linked Microsatellite Marker

(2014) Xiaolin Liao et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Whole-genome sequence of a flatfish provides insights into ZW sex chromosome evolution and adaptation to a benthic lifestyle

(2014) Songlin Chen et al.   NATURE GENETICS

Co-option of Sox3 as the male-determining factor on the Y chromosome in the fish Oryzias dancena

(2014) Yusuke Takehana et al.   Nature Communications

MCScanX-transposed: detecting transposed gene duplications based on multiple colinearity scans

(2013) Yupeng Wang et al.   BIOINFORMATICS

Novel sex-determining genes in fish and sex chromosome evolution

(2013) Kiyoshi Kikuchi et al.   DEVELOPMENTAL DYNAMICS

Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data

(2013) Chen-Shan Chin et al.   NATURE METHODS

Y-chromosome evolution: emerging insights into processes of Y-chromosome degeneration

(2013) Doris Bachtrog   NATURE REVIEWS GENETICS

Identification and Characterization of MicroRNAs in Channel Catfish (Ictalurus punctatus) by Using Solexa Sequencing Technology

(2013) Zhiqiang Xu et al.   PLoS One

Male-Biased Genes in Catfish as Revealed by RNA-Seq Analysis of the Testis Transcriptome

(2013) Fanyue Sun et al.   PLoS One

A standardized microsatellite marker panel for parentage and kinship analyses in channel catfish,Ictalurus punctatus

(2012) G. C. Waldbieser et al.   ANIMAL GENETICS

Relative effectiveness of carp pituitary extract, luteininzing hormone releasing hormone analog (LHRHa) injections and LHRHa implants for producing hybrid catfish fry

(2012) Baofeng Su et al.   AQUACULTURE

Sequencing of rhesus macaque Y chromosome clarifies origins and evolution of theDAZ(Deleted in AZoospermia) genes

(2012) Jennifer F. Hughes et al.   BIOESSAYS

An Immune-Related Gene Evolved into the Master Sex-Determining Gene in Rainbow Trout, Oncorhynchus mykiss

(2012) Ayaka Yano et al.   CURRENT BIOLOGY

How to evolve new vertebrate sex determining genes

(2012) Jennifer A. Marshall Graves   DEVELOPMENTAL DYNAMICS

Tracing the Emergence of a Novel Sex-Determining Gene in Medaka, Oryzias luzonensis

(2012) T. Myosho et al.   GENETICS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

A Y-linked anti-Mullerian hormone duplication takes over a critical role in sex determination

(2012) R. S. Hattori et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Trans-Species Missense SNP in Amhr2 Is Associated with Sex Determination in the Tiger Pufferfish, Takifugu rubripes (Fugu)

(2012) Takashi Kamiya et al.   PLoS Genetics

Identification of a sex-linked marker for channel catfish

(2011) P. Ninwichian et al.   ANIMAL GENETICS

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Estrogen represses SOX9 during sex determination in the red-eared slider turtle Trachemys scripta

(2010) Lindsey A. Barske et al.   DEVELOPMENTAL BIOLOGY

Aromatase, brain sexualization and plasticity: the fish paradigm

(2010) Yann Le Page et al.   EUROPEAN JOURNAL OF NEUROSCIENCE

Chimpanzee and human Y chromosomes are remarkably divergent in structure and gene content

(2010) Jennifer F. Hughes et al.   NATURE

Are homologies in vertebrate sex determination due to shared ancestry or to limited options?

(2010) Jennifer A Marshall Graves et al.   GENOME BIOLOGY

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Identification of the Major Sex-Determining Region of Turbot ( Scophthalmus maximus )

(2009) Paulino Martínez et al.   GENETICS

The avian Z-linked gene DMRT1 is required for male sex determination in the chicken

(2009) Craig A. Smith et al.   NATURE

Evolutionary Diversity and Turn-Over of Sex Determination in Teleost Fishes

(2009) J.E. Mank et al.   Sexual Development

Sex reversal of the amphibian, Xenopus tropicalis, following larval exposure to an aromatase inhibitor

(2008) Allen W. Olmstead et al.   AQUATIC TOXICOLOGY