Cryo-EM structure of an extracellular Geobacter OmcE cytochrome filament reveals tetrahaem packing

The Signaling Pathway That cGAMP Riboswitches Found: Analysis and Application of Riboswitches to Study cGAMP Signaling in Geobacter sulfurreducens

(2022) Zhesen Tan et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Intrinsically Conductive Microbial Nanowires for ‘Green’ Electronics with Novel Functions

(2021) Derek R. Lovley et al.   TRENDS IN BIOTECHNOLOGY

Genetic analysis of electroactive biofilms

(2021) Dena L. Cologgi et al.   INTERNATIONAL MICROBIOLOGY

Highly accurate protein structure prediction with AlphaFold

(2021) John Jumper et al.   NATURE

Structure of Geobacter pili reveals secretory rather than nanowire behaviour

(2021) Yangqi Gu et al.   NATURE

Electromicrobiology: the ecophysiology of phylogenetically diverse electroactive microorganisms

(2021) Derek R. Lovley et al.   NATURE REVIEWS MICROBIOLOGY

Direct Observation of Electrically Conductive Pili Emanating from Geobacter sulfurreducens

(2021) Xinying Liu et al.   mBio

The Crystal Structure of a Biological Insulated Transmembrane Molecular Wire

(2020) Marcus J. Edwards et al.   CELL

His/Met heme ligation in the PioA outer membrane cytochrome enabling light-driven extracellular electron transfer by Rhodopseudomonas palustris TIE-1.

(2020) Dao-Bo Li et al.   NANOTECHNOLOGY

Cryo-electron microscopy reveals two distinct type IV pili assembled by the same bacterium

(2020) Alexander Neuhaus et al.   Nature Communications

Protein Nanowires: The Electrification of the Microbial World and Maybe Our Own

(2020) Derek R. Lovley et al.   JOURNAL OF BACTERIOLOGY

Biology and biotechnology of microbial pilus nanowires

(2020) Morgen M. Clark et al.   JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY

Electric field stimulates production of highly conductive microbial OmcZ nanowires

(2020) Sibel Ebru Yalcin et al.   Nature Chemical Biology

UCSF ChimeraX : Structure visualization for researchers, educators, and developers

(2020) Eric F. Pettersen et al.   PROTEIN SCIENCE

The blind men and the filament: Understanding structures and functions of microbial nanowires

(2020) Sibel Ebru Yalcin et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Spatially Resolved Chemical Analysis of Geobacter sulfurreducens Cell Surface

(2019) Nikolai Lebedev et al.   ACS Nano

Structure of Microbial Nanowires Reveals Stacked Hemes that Transport Electrons over Micrometers

(2019) Fengbin Wang et al.   CELL

Structure and Assembly of the Enterohemorrhagic Escherichia coli Type 4 Pilus

(2019) Benjamin Bardiaux et al.   STRUCTURE

Structure and mechanism of a Hypr GGDEF enzyme that activates cGAMP signaling to control extracellular metal respiration

(2019) Zachary F Hallberg et al.   eLife

An extensively glycosylated archaeal pilus survives extreme conditions

(2019) Fengbin Wang et al.   Nature Microbiology

Influence of the major pilA transcriptional regulator in electrochemical responses of Geobacter sulfureducens PilR-deficient mutant biofilm formed on FTO electrodes

(2019) G.A. Huerta-Miranda et al.   BIOELECTROCHEMISTRY

Geobacter Protein Nanowires

(2019) Derek R. Lovley et al.   Frontiers in Microbiology

Evidence for the coexistence of direct and riboflavin‐mediated interspecies electron transfer in Geobacter co‐culture

(2019) Lingyan Huang et al.   ENVIRONMENTAL MICROBIOLOGY

The extracellular DNA lattice of bacterial biofilms is structurally related to Holliday junction recombination intermediates

(2019) Aishwarya Devaraj et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phylogenetic and structural diversity of aromatically dense pili from environmental metagenomes

(2019) Marcus S. Bray et al.   Environmental Microbiology Reports

Bottom-Up Fabrication of Protein Nanowires via Controlled Self-Assembly of Recombinant Geobacter Pilins

(2019) K. M. Cosert et al.   mBio

Syntrophic growth with direct interspecies electron transfer between pili-free Geobacter species

(2018) Xing Liu et al.   ISME Journal

Interplay of a secreted protein with type IVb pilus for efficient enterotoxigenicEscherichia colicolonization

(2018) Hiroya Oki et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Necessity of electrically conductive pili for methanogenesis with magnetite stimulation

(2018) Oumei Wang et al.   PeerJ

Real-space refinement in PHENIX for cryo-EM and crystallography

(2018) Pavel V. Afonine et al.   Acta Crystallographica Section D-Structural Biology

Identification of Different Putative Outer Membrane Electron Conduits Necessary for Fe(III) Citrate, Fe(III) Oxide, Mn(IV) Oxide, or Electrode Reduction by Geobacter sulfurreducens

(2018) Fernanda Jiménez Otero et al.   JOURNAL OF BACTERIOLOGY

New tools for the analysis and validation of cryo-EM maps and atomic models

(2018) Pavel V. Afonine et al.   Acta Crystallographica Section D-Structural Biology

MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy

(2017) Shawn Q Zheng et al.   NATURE METHODS

cryoSPARC: algorithms for rapid unsupervised cryo-EM structure determination

(2017) Ali Punjani et al.   NATURE METHODS

Geobacter sulfurreducens pili support ohmic electronic conduction in aqueous solution

(2017) Nicole L. Ing et al.   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

MolProbity: More and better reference data for improved all-atom structure validation

(2017) Christopher J. Williams et al.   PROTEIN SCIENCE

Comparative transcriptomic insights into the mechanisms of electron transfer in Geobacter co-cultures with activated carbon and magnetite

(2017) Shiling Zheng et al.   Science China-Life Sciences

Cryoelectron Microscopy Reconstructions of the Pseudomonas aeruginosa and Neisseria gonorrhoeae Type IV Pili at Sub-nanometer Resolution

(2017) Fengbin Wang et al.   STRUCTURE

Structure of the calcium-dependent type 2 secretion pseudopilus

(2017) Aracelys López-Castilla et al.   Nature Microbiology

Design and fine-tuning redox potentials of metalloproteins involved in electron transfer in bioenergetics

(2016) Parisa Hosseinzadeh et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Reduction of low potential electron acceptors requires the CbcL inner membrane cytochrome of Geobacter sulfurreducens

(2016) Lori Zacharoff et al.   BIOELECTROCHEMISTRY

Type IV pilins regulate their own expression via direct intramembrane interactions with the sensor kinase PilS

(2016) Sara L. N. Kilmury et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Anammox Biochemistry: a Tale of Heme c Proteins

(2016) Boran Kartal et al.   TRENDS IN BIOCHEMICAL SCIENCES

Structure of the Neisseria meningitidis Type IV pilus

(2016) Subramania Kolappan et al.   Nature Communications

Scarless Genome Editing and Stable Inducible Expression Vectors for Geobacter sulfurreducens

(2015) Chi Ho Chan et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

CTFFIND4: Fast and accurate defocus estimation from electron micrographs

(2015) Alexis Rohou et al.   JOURNAL OF STRUCTURAL BIOLOGY

Structural Basis for Metallic-Like Conductivity in Microbial Nanowires

(2015) Nikhil S. Malvankar et al.   mBio

Microbial nanowires for bioenergy applications

(2014) Nikhil S Malvankar et al.   CURRENT OPINION IN BIOTECHNOLOGY

Visualization of charge propagation along individual pili proteins using ambient electrostatic force microscopy

(2014) Nikhil S. Malvankar et al.   Nature Nanotechnology

Construction of Mobilizable Mini-Tn7Vectors for Bioluminescent Detection of Gram-Negative Bacteria and Single-Copy PromoterluxReporter Analysis

(2013) F. Heath Damron et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Proteins involved in electron transfer to Fe(III) and Mn(IV) oxides by Geobacter sulfurreducens and Geobacter uraniireducens

(2013) M. Aklujkar et al.   MICROBIOLOGY-SGM

Syntrophic growth with direct interspecies electron transfer as the primary mechanism for energy exchange

(2013) Pravin Malla Shrestha et al.   Environmental Microbiology Reports

Outer Cell Surface Components Essential for Fe(III) Oxide Reduction by Geobacter metallireducens

(2012) Jessica A. Smith et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Comparative genomic analysis of Geobacter sulfurreducens KN400, a strain with enhanced capacity for extracellular electron transfer and electricity production

(2012) Jessica E Butler et al.   BMC GENOMICS

Two Isoforms of Geobacter sulfurreducens PilA Have Distinct Roles in Pilus Biogenesis, Cytochrome Localization, Extracellular Electron Transfer, and Biofilm Formation

(2012) L. V. Richter et al.   JOURNAL OF BACTERIOLOGY

Effects of tissue hydration on nanoscale structural morphology and mechanics of individual Type I collagen fibrils in the Brtl mouse model of Osteogenesis Imperfecta

(2012) Arika D. Kemp et al.   JOURNAL OF STRUCTURAL BIOLOGY

mMass as a Software Tool for the Annotation of Cyclic Peptide Tandem Mass Spectra

(2012) Timo H. J. Niedermeyer et al.   PLoS One

Metabolic and practical considerations on microbial electrosynthesis

(2011) Korneel Rabaey et al.   CURRENT OPINION IN BIOTECHNOLOGY

Benthic Microbial Fuel Cell as Direct Power Source for an Acoustic Modem and Seawater Oxygen/Temperature Sensor System

(2011) Yanming Gong et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

DNA charge transport over 34 nm

(2011) Jason D. Slinker et al.   Nature Chemistry

Tunable metallic-like conductivity in microbial nanowire networks

(2011) Nikhil S. Malvankar et al.   Nature Nanotechnology

Extracellular reduction of uranium via Geobacter conductive pili as a protective cellular mechanism

(2011) D. L. Cologgi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Potential for Direct Interspecies Electron Transfer in Methanogenic Wastewater Digester Aggregates

(2011) M. Morita et al.   mBio

mMass3: A Cross-Platform Software Environment for Precise Analysis of Mass Spectrometric Data

(2010) Martin Strohalm et al.   ANALYTICAL CHEMISTRY

Role of Geobacter sulfurreducens Outer Surface c-Type Cytochromes in Reduction of Soil Humic Acid and Anthraquinone-2,6-Disulfonate

(2010) J. W. Voordeckers et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Production of pilus-like filaments in Geobacter sulfurreducens in the absence of the type IV pilin protein PilA

(2010) Anna Klimes et al.   FEMS MICROBIOLOGY LETTERS

Negative staining and cryo-negative staining of macromolecules and viruses for TEM

(2010) Sacha De Carlo et al.   MICRON

Direct Exchange of Electrons Within Aggregates of an Evolved Syntrophic Coculture of Anaerobic Bacteria

(2010) Z. M. Summers et al.   SCIENCE

Cyclic voltammetry of biofilms of wild type and mutant Geobacter sulfurreducens on fuel cell anodes indicates possible roles of OmcB, OmcZ, type IV pili, and protons in extracellular electron transfer

(2009) Hanno Richter et al.   Energy & Environmental Science

A New Method for Water Desalination Using Microbial Desalination Cells

(2009) Xiaoxin Cao et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Anode Biofilm Transcriptomics Reveals Outer Surface Components Essential for High Density Current Production in Geobacter sulfurreducens Fuel Cells

(2009) Kelly P. Nevin et al.   PLoS One

Microbial Communities in Contaminated Sediments, Associated with Bioremediation of Uranium to Submicromolar Levels

(2008) E. Cardenas et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbial Biofilm Voltammetry: Direct Electrochemical Characterization of Catalytic Electrode-Attached Biofilms

(2008) E. Marsili et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Insights into genes involved in electricity generation in Geobacter sulfurreducens via whole genome microarray analysis of the OmcF-deficient mutant

(2008) Byoung-Chan Kim et al.   BIOELECTROCHEMISTRY

Twitching Motility Is Essential for Virulence in Dichelobacter nodosus

(2008) X. Han et al.   JOURNAL OF BACTERIOLOGY

mMass data miner: an open source alternative for mass spectrometric data analysis

(2008) Martin Strohalm et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY