CCAS: One-stop and comprehensive annotation system for individual cancer genome at multi-omics level
Published 2022 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
CCAS: One-stop and comprehensive annotation system for individual cancer genome at multi-omics level
Authors
Keywords
-
Journal
Frontiers in Genetics
Volume 13, Issue -, Pages -
Publisher
Frontiers Media SA
Online
2022-08-11
DOI
10.3389/fgene.2022.956781
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- A platform for oncogenomic reporting and interpretation
- (2022) Caralyn Reisle et al. Nature Communications
- MAPK4 promotes prostate cancer by concerted activation of androgen receptor and AKT
- (2021) Tao Shen et al. JOURNAL OF CLINICAL INVESTIGATION
- Genomic aberrations after short-term exposure to colibactin-producing E. coli transform primary colon epithelial cells
- (2021) Amina Iftekhar et al. Nature Communications
- The Human Disease Ontology 2022 update
- (2021) Lynn M Schriml et al. NUCLEIC ACIDS RESEARCH
- The reactome pathway knowledgebase 2022
- (2021) Marc Gillespie et al. NUCLEIC ACIDS RESEARCH
- Cancer Genome Evolutionary Trajectories in Metastasis
- (2020) Nicolai J. Birkbak et al. CANCER CELL
- Pan-cancer analysis of whole genomes
- (2020) NATURE
- The mutational constraint spectrum quantified from variation in 141,456 humans
- (2020) Konrad J. Karczewski et al. NATURE
- Visualizing and interpreting cancer genomics data via the Xena platform
- (2020) Mary J. Goldman et al. NATURE BIOTECHNOLOGY
- The PI3K-AKT-mTOR Pathway and Prostate Cancer: At the Crossroads of AR, MAPK, and WNT Signaling
- (2020) Boris Y. Shorning et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- A user guide for the online exploration and visualization of PCAWG data
- (2020) Mary J. Goldman et al. Nature Communications
- GenomeChronicler: The Personal Genome Project UK Genomic Report Generator Pipeline
- (2020) José Afonso Guerra-Assunção et al. Frontiers in Genetics
- Integration of the Drug–Gene Interaction Database (DGIdb 4.0) with open crowdsource efforts
- (2020) Sharon L Freshour et al. NUCLEIC ACIDS RESEARCH
- UniProt: the universal protein knowledgebase in 2021
- (2020) et al. NUCLEIC ACIDS RESEARCH
- dbNSFP v4: a comprehensive database of transcript-specific functional predictions and annotations for human nonsynonymous and splice-site SNVs
- (2020) Xiaoming Liu et al. Genome Medicine
- CancerMine: a literature-mined resource for drivers, oncogenes and tumor suppressors in cancer
- (2019) Jake Lever et al. NATURE METHODS
- The Need for Multi-Omics Biomarker Signatures in Precision Medicine
- (2019) Michael Olivier et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- ARID1A upregulation predicts better survival in patients with urothelial bladder carcinoma
- (2019) Qifeng Cao et al. JOURNAL OF INTERNATIONAL MEDICAL RESEARCH
- Molecular Subtype-Specific Immunocompetent Models of High-Grade Urothelial Carcinoma Reveal Differential Neoantigen Expression and Response to Immunotherapy
- (2018) Ryoichi Saito et al. CANCER RESEARCH
- Cancer Genome Interpreter annotates the biological and clinical relevance of tumor alterations
- (2018) David Tamborero et al. Genome Medicine
- COSMIC: the Catalogue Of Somatic Mutations In Cancer
- (2018) John G Tate et al. NUCLEIC ACIDS RESEARCH
- Open Targets Platform: new developments and updates two years on
- (2018) Denise Carvalho-Silva et al. NUCLEIC ACIDS RESEARCH
- Onco-Multi-OMICS Approach: A New Frontier in Cancer Research
- (2018) Sajib Chakraborty et al. Biomed Research International
- Ensembl 2018
- (2017) Daniel R Zerbino et al. NUCLEIC ACIDS RESEARCH
- Accelerating Discovery of Functional Mutant Alleles in Cancer
- (2017) Matthew T. Chang et al. Cancer Discovery
- How to use the medical subject headings (MeSH)
- (2016) N. Baumann INTERNATIONAL JOURNAL OF CLINICAL PRACTICE
- ARID1A loss impairs enhancer-mediated gene regulation and drives colon cancer in mice
- (2016) Radhika Mathur et al. NATURE GENETICS
- The ExAC browser: displaying reference data information from over 60 000 exomes
- (2016) Konrad J. Karczewski et al. NUCLEIC ACIDS RESEARCH
- Open Targets: a platform for therapeutic target identification and validation
- (2016) Gautier Koscielny et al. NUCLEIC ACIDS RESEARCH
- Loss of HDAC-Mediated Repression and Gain of NF-κB Activation Underlie Cytokine Induction in ARID1A- and PIK3CA-Mutation-Driven Ovarian Cancer
- (2016) Minchul Kim et al. Cell Reports
- Unified representation of genetic variants
- (2015) Adrian Tan et al. BIOINFORMATICS
- Global Cancer Incidence and Mortality Rates and Trends--An Update
- (2015) L. A. Torre et al. CANCER EPIDEMIOLOGY BIOMARKERS & PREVENTION
- Identifying recurrent mutations in cancer reveals widespread lineage diversity and mutational specificity
- (2015) Matthew T Chang et al. NATURE BIOTECHNOLOGY
- CrossMap: a versatile tool for coordinate conversion between genome assemblies
- (2013) Hao Zhao et al. BIOINFORMATICS
- GSVA: gene set variation analysis for microarray and RNA-Seq data
- (2013) Sonja Hänzelmann et al. BMC BIOINFORMATICS
- Lessons from the Cancer Genome
- (2013) Levi A. Garraway et al. CELL
- Cancer incidence and mortality patterns in Europe: Estimates for 40 countries in 2012
- (2013) J. Ferlay et al. EUROPEAN JOURNAL OF CANCER
- Integrative Analysis of Complex Cancer Genomics and Clinical Profiles Using the cBioPortal
- (2013) J. Gao et al. Science Signaling
- A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff
- (2012) Pablo Cingolani et al. FLY
- The cBio Cancer Genomics Portal: An Open Platform for Exploring Multidimensional Cancer Genomics Data: Figure 1.
- (2012) Ethan Cerami et al. Cancer Discovery
- Tabix: fast retrieval of sequence features from generic TAB-delimited files
- (2011) H. Li BIOINFORMATICS
- A map of human genome variation from population-scale sequencing
- (2010) Richard M. Durbin et al. NATURE
- ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data
- (2010) K. Wang et al. NUCLEIC ACIDS RESEARCH
- The cancer genome
- (2009) Michael R. Stratton et al. NATURE
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationFind the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
Search