Designing a synthetic microbial community devoted to biological control: The case study of Fusarium wilt of banana

Impacts of the Biocontrol Strain Pseudomonas simiae PICF7 on the Banana Holobiont: Alteration of Root Microbial Co-occurrence Networks and Effect on Host Defense Responses

(2022) Carmen Gómez-Lama Cabanás et al.   Frontiers in Microbiology

Assessing the Involvement of Selected Phenotypes of Pseudomonas simiae PICF7 in Olive Root Colonization and Biological Control of Verticillium dahliae

(2021) Nuria Montes-Osuna et al.   Plants-Basel

The Banana Root Endophytome: Differences between Mother Plants and Suckers and Evaluation of Selected Bacteria to Control Fusarium oxysporum f.sp. cubense

(2021) Carmen Gómez-Lama Cabanás et al.   Journal of Fungi

Basidiomycetes Are Particularly Sensitive to Bacterial Volatile Compounds: Mechanistic Insight Into the Case Study of Pseudomonas protegens Volatilome Against Heterobasidion abietinum

(2021) Maria Isabella Prigigallo et al.   Frontiers in Microbiology

Evaluation of Indigenous Olive Biocontrol Rhizobacteria as Protectants against Drought and Salt Stress

(2021) Nuria Montes-Osuna et al.   Microorganisms

Sequencing DNA with nanopores: Troubles and biases

(2021) Clara Delahaye et al.   PLoS One

Microbial Consortia for Effective Biocontrol of Root and Foliar Diseases in Tomato

(2021) Zhivko Minchev et al.   Frontiers in Plant Science

Biological Control of Plant Diseases: An Evolutionary and Eco-Economic Consideration

(2021) Dun-Chun He et al.   Pathogens

Trichoderma virens Gl006 and Bacillus velezensis Bs006: a compatible interaction controlling Fusarium wilt of cape gooseberry

(2020) L. F. Izquierdo-García et al.   Scientific Reports

Enhanced production of heterologous proteins by a synthetic microbial community: Conditions and trade-offs

(2020) Marco Mauri et al.   PLoS Computational Biology

Plant–microbiome interactions: from community assembly to plant health

(2020) Pankaj Trivedi et al.   NATURE REVIEWS MICROBIOLOGY

Repetitive Elements Contribute to the Diversity and Evolution of Centromeres in the Fungal Genus Verticillium

(2020) Michael F. Seidl et al.   mBio

From Microbiome to Traits: Designing Synthetic Microbial Communities for Improved Crop Resiliency

(2020) Rafael Soares Correa de Souza et al.   Frontiers in Plant Science

Soil microbiota manipulation and its role in suppressing soil-borne plant pathogens in organic farming systems under the light of microbiome-assisted strategies

(2020) Ugo De Corato   Chemical and Biological Technologies in Agriculture

RefSeq: expanding the Prokaryotic Genome Annotation Pipeline reach with protein family model curation

(2020) Wenjun Li et al.   NUCLEIC ACIDS RESEARCH

Soil Microbiome Manipulation Gives New Insights in Plant Disease-Suppressive Soils from the Perspective of a Circular Economy: A Critical Review

(2020) Ugo De Corato   Sustainability

A review on the plant microbiome: Ecology, functions, and emerging trends in microbial application

(2019) Stéphane Compant et al.   Journal of Advanced Research

Agricultural intensification reduces microbial network complexity and the abundance of keystone taxa in roots

(2019) Samiran Banerjee et al.   ISME Journal

Microbial Consortia versus Single-Strain Inoculants: An Advantage in PGPM-Assisted Tomato Production?

(2019) Klára Bradáčová et al.   Agronomy-Basel

Biological Control Agents Against Fusarium Wilt of Banana

(2019) Giovanni Bubici et al.   Frontiers in Microbiology

Annotated bacterial chromosomes from frame-shift-corrected long-read metagenomic data

(2019) Krithika Arumugam et al.   Microbiome

Beyond pathogens: microbiota interactions with the plant immune system

(2019) Paulo José PL Teixeira et al.   CURRENT OPINION IN MICROBIOLOGY

Fusaric acid instigates the invasion of banana by Fusarium oxysporum f. sp. cubense TR4

(2019) Siwen Liu et al.   NEW PHYTOLOGIST

Mode of Action of Microbial Biological Control Agents Against Plant Diseases: Relevance Beyond Efficacy

(2019) Jürgen Köhl et al.   Frontiers in Plant Science

The Epidemiology of Fusarium Wilt of Banana

(2019) Kenneth G. Pegg et al.   Frontiers in Plant Science

Synthetic microbial consortia for small molecule production

(2019) Elvira Sgobba et al.   CURRENT OPINION IN BIOTECHNOLOGY

Microbiome engineering to improve biocontrol and plant growth-promoting mechanisms

(2018) Ma del Carmen Orozco-Mosqueda et al.   MICROBIOLOGICAL RESEARCH

Indigenous Pseudomonas spp. Strains from the Olive (Olea europaea L.) Rhizosphere as Effective Biocontrol Agents against Verticillium dahliae: From the Host Roots to the Bacterial Genomes

(2018) Carmen Gómez-Lama Cabanás et al.   Frontiers in Microbiology

Belowground Microbiota and the Health of Tree Crops

(2018) Jesús Mercado-Blanco et al.   Frontiers in Microbiology

Fusarium Wilt of Banana: Current Knowledge on Epidemiology and Research Needs Toward Sustainable Disease Management

(2018) Miguel Dita et al.   Frontiers in Plant Science

Microbial Consortium Design Benefits from Metabolic Modeling

(2018) Karoline Faust   TRENDS IN BIOTECHNOLOGY

In vitro bacterization of banana (Musa spp.) with native endophytic and rhizospheric bacterial isolates: Novel ways to combat Fusarium wilt

(2017) M. Kavino et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation

(2017) Sergey Koren et al.   GENOME RESEARCH

Principles for designing synthetic microbial communities

(2016) Nathan I Johns et al.   CURRENT OPINION IN MICROBIOLOGY

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update

(2016) Enis Afgan et al.   NUCLEIC ACIDS RESEARCH

Bacillus amyloliquefaciens Strain W19 can Promote Growth and Yield and Suppress Fusarium Wilt in Banana Under Greenhouse and Field Conditions

(2016) Beibei WANG et al.   PEDOSPHERE

An Underground Revolution: Biodiversity and Soil Ecological Engineering for Agricultural Sustainability

(2016) S. Franz Bender et al.   TRENDS IN ECOLOGY & EVOLUTION

Genomic and Genetic Diversity within the Pseudomonas fluorescens Complex

(2016) Daniel Garrido-Sanz et al.   PLoS One

A complete bacterial genome assembled de novo using only nanopore sequencing data

(2015) Nicholas J Loman et al.   NATURE METHODS

Soils naturally suppressive to banana Fusarium wilt disease harbor unique bacterial communities

(2015) Zongzhuan Shen et al.   PLANT AND SOIL

Resistance sources toFusarium oxysporumf. sp.cubensetropical race 4 in banana wild relatives

(2015) W. M. Li et al.   PLANT PATHOLOGY

Microbial consortium-mediated plant defense against phytopathogens: Readdressing for enhancing efficacy

(2015) Birinchi Kumar Sarma et al.   SOIL BIOLOGY & BIOCHEMISTRY

Manipulating the banana rhizosphere microbiome for biological control of Panama disease

(2015) Chao Xue et al.   Scientific Reports

Phylogenomics and systematics in Pseudomonas

(2015) Margarita Gomila et al.   Frontiers in Microbiology

Synthetic microbial communities

(2014) Tobias Großkopf et al.   CURRENT OPINION IN MICROBIOLOGY

Genome Analysis of Bacillus amyloliquefaciens Subsp. plantarum UCMB5113: A Rhizobacterium That Improves Plant Growth and Stress Management

(2014) Adnan Niazi et al.   PLoS One

Evaluation of Streptomyces spp. for the biological control of corky root of tomato and Verticillium wilt of eggplant

(2013) Giovanni Bubici et al.   APPLIED SOIL ECOLOGY

Contamination of Bananas with Beauvericin and Fusaric Acid Produced by Fusarium oxysporum f. sp. cubense

(2013) Chunyu Li et al.   PLoS One

Bespoke microbiome therapy to manage plant diseases

(2013) Murali Gopal et al.   Frontiers in Microbiology

NIH Image to ImageJ: 25 years of image analysis

(2012) Caroline A Schneider et al.   NATURE METHODS

Combined application of botanical formulations and biocontrol agents for the management of Fusarium oxysporum f. sp. cubense (Foc) causing Fusarium wilt in banana

(2011) R. Akila et al.   BIOLOGICAL CONTROL

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

(2011) F. Sievers et al.   Molecular Systems Biology

Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma

(2011) Christian P Kubicek et al.   GENOME BIOLOGY

A molecular diagnostic for tropical race 4 of the banana fusarium wilt pathogen

(2010) M. A. Dita et al.   PLANT PATHOLOGY

Signals of growth regulation in bacteria

(2009) Christopher S Hayes et al.   CURRENT OPINION IN MICROBIOLOGY

Using native and syntenically mapped cDNA alignments to improve de novo gene finding

(2008) Mario Stanke et al.   BIOINFORMATICS

Characterization of Chromosome Ends in the Filamentous Fungus Neurospora crassa

(2008) C. Wu et al.   GENETICS