Comparative transcriptome analysis reveals a rapid response to phosphorus deficiency in a phosphorus-efficient rice genotype

Mechanistic insights into the regulation of plant phosphate homeostasis by the rice SPX2 – PHR2 complex

(2022) Zeyuan Guan et al.   Nature Communications

Inositol pyrophosphates promote the interaction of SPX domains with the coiled-coil motif of PHR transcription factors to regulate plant phosphate homeostasis

(2021) Martina K. Ried et al.   Nature Communications

Phosphorus application affects lowland rice yields by changing phenological development and cold stress degrees in the central highlands of Madagascar

(2021) Bruce Haja Andrianary et al.   FIELD CROPS RESEARCH

From gene banks to farmer’s fields: using genomic selection to identify donors for a breeding program in rice to close the yield gap on smallholder farms

(2021) Ryokei Tanaka et al.   THEORETICAL AND APPLIED GENETICS

Leaf phosphorus fractionation in rice to understand internal phosphorus-use efficiency

(2021) Patrick E Hayes et al.   ANNALS OF BOTANY

The contribution of plant traits and soil microbes to phosphorus uptake from low-phosphorus soil in upland rice varieties

(2020) Matthias Wissuwa et al.   PLANT AND SOIL

Node-localized transporters of phosphorus essential for seed development in rice

(2020) Jing Che et al.   PLANT AND CELL PHYSIOLOGY

Transcriptomic analysis of photosynthesis‐related genes regulated by alternate wetting and drying irrigation in flag leaves of rice

(2020) Tao Song et al.   Food and Energy Security

Phosphorus deficiency tolerance in Oryza sativa: Root and rhizosphere traits

(2020) Tovohery Rakotoson et al.   Rhizosphere

Protocol Update for large-scale genome and gene function analysis with the PANTHER classification system (v.14.0)

(2019) Huaiyu Mi et al.   Nature Protocols

Two bifunctional inositol pyrophosphate kinases/phosphatases control plant phosphate homeostasis

(2019) Jinsheng Zhu et al.   eLife

Rice SPX6 negatively regulates the phosphate starvation response through suppression of the transcription factor PHR2

(2018) Yongjia Zhong et al.   NEW PHYTOLOGIST

IR64: a high-quality and high-yielding mega variety

(2018) David J. Mackill et al.   Rice

Evolution of the SPX gene family in plants and its role in the response mechanism to phosphorus stress

(2018) Na Liu et al.   Open Biology

Genetic enhancement of phosphorus starvation tolerance through marker assisted introgression of OsPSTOL1 gene in rice genotypes harbouring bacterial blight and blast resistance

(2018) Kannan Chithrameenal et al.   PLoS One

Transcriptional response of rice flag leaves to restricted external phosphorus supply during grain filling in rice cv. IR64

(2018) Kwanho Jeong et al.   PLoS One

PANTHER version 14: more genomes, a new PANTHER GO-slim and improvements in enrichment analysis tools

(2018) Huaiyu Mi et al.   NUCLEIC ACIDS RESEARCH

The Gene Ontology Resource: 20 years and still GOing strong

(2018)   NUCLEIC ACIDS RESEARCH

Yield-limiting macronutrients for rice in sub-Saharan Africa

(2018) Kazuki Saito et al.   GEODERMA

Improving phosphorus use efficiency: a complex trait with emerging opportunities

(2017) Sigrid Heuer et al.   PLANT JOURNAL

Strategic phosphorus (P) application to the nursery bed increases seedling growth and yield of transplanted rice at low P supply

(2016) Elke Vandamme et al.   FIELD CROPS RESEARCH

The role of root size versus root efficiency in phosphorus acquisition in rice

(2016) Asako Mori et al.   JOURNAL OF EXPERIMENTAL BOTANY

Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown

(2016) Mihaela Pertea et al.   Nature Protocols

Genotypic Variation in Grain P Loading across Diverse Rice Growing Environments and Implications for Field P Balances

(2016) Elke Vandamme et al.   Frontiers in Plant Science

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

(2015) Mihaela Pertea et al.   NATURE BIOTECHNOLOGY

Database resources of the National Center for Biotechnology Information

(2015)   NUCLEIC ACIDS RESEARCH

Screening for internal phosphorus utilisation efficiency: comparison of genotypes at equal shoot P content is critical

(2015) Terry J. Rose et al.   PLANT AND SOIL

SPX4 Negatively Regulates Phosphate Signaling and Homeostasis through Its Interaction with PHR2 in Rice

(2014) Q. Lv et al.   PLANT CELL

Rice SPX1 and SPX2 inhibit phosphate starvation responses through interacting with PHR2 in a phosphate-dependent manner

(2014) Z. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rice Annotation Project Database (RAP-DB): An Integrative and Interactive Database for Rice Genomics

(2013) Hiroaki Sakai et al.   PLANT AND CELL PHYSIOLOGY

PORPHOBILINOGEN DEAMINASE Deficiency Alters Vegetative and Reproductive Development and Causes Lesions in Arabidopsis

(2013) Víctor Quesada et al.   PLoS One

Approaching a dynamic view on the availability of mineral resources: What we may learn from the case of phosphorus?

(2012) Roland W. Scholz et al.   GLOBAL ENVIRONMENTAL CHANGE-HUMAN AND POLICY DIMENSIONS

The protein kinase Pstol1 from traditional rice confers tolerance of phosphorus deficiency

(2012) Rico Gamuyao et al.   NATURE

Primer3—new capabilities and interfaces

(2012) Andreas Untergasser et al.   NUCLEIC ACIDS RESEARCH

Effect of integrated use of cattle manure and inorganic fertilizers on tuber yield of potato in Ethiopia

(2012) T Balemi   Journal of Soil Science and Plant Nutrition

A Processive Glycosyltransferase Involved in Glycolipid Synthesis during Phosphate Deprivation in Mesorhizobium loti

(2011) E. A. Devers et al.   JOURNAL OF BACTERIOLOGY

World fertilizer nutrient reserves: a view to the future

(2011) Paul E Fixen et al.   JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE

Identification of rice purple acid phosphatases related to posphate starvation signalling

(2010) Q. Zhang et al.   PLANT BIOLOGY

Characterization of the Rice PHO1 Gene Family Reveals a Key Role for OsPHO1;2 in Phosphate Homeostasis and the Evolution of a Distinct Clade in Dicotyledons

(2010) D. Secco et al.   PLANT PHYSIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Environment: The disappearing nutrient

(2009) Natasha Gilbert   NATURE

Phosphate signaling in Arabidopsis and Oryza sativa

(2008) Zhaoyuan Fang et al.   PLANT SCIENCE