Construction of the axolotl cell landscape using combinatorial hybridization sequencing at single-cell resolution
Published 2022 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Construction of the axolotl cell landscape using combinatorial hybridization sequencing at single-cell resolution
Authors
Keywords
-
Journal
Nature Communications
Volume 13, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2022-07-22
DOI
10.1038/s41467-022-31879-z
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Human limbal epithelial stem cell regulation, bioengineering and function
- (2021) Clémence Bonnet et al. PROGRESS IN RETINAL AND EYE RESEARCH
- Secreted inhibitors drive the loss of regeneration competence in Xenopus limbs
- (2021) Can Aztekin et al. DEVELOPMENT
- Fibroblast dedifferentiation as a determinant of successful regeneration
- (2021) Tzi-Yang Lin et al. DEVELOPMENTAL CELL
- Salamander Insights Into Ageing and Rejuvenation
- (2021) Maximina H. Yun Frontiers in Cell and Developmental Biology
- Fibrinogen improves liver function via promoting cell aggregation and fibronectin assembly in hepatic spheroids
- (2021) Ruihong Li et al. BIOMATERIALS
- Whole-animal multiplexed single-cell RNA-seq reveals transcriptional shifts across Clytia medusa cell types
- (2021) Tara Chari et al. Science Advances
- Mice Lacking the Matrilin Family of Extracellular Matrix Proteins Develop Mild Skeletal Abnormalities and Are Susceptible to Age-Associated Osteoarthritis
- (2020) Ping Li et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Construction of a human cell landscape at single-cell level
- (2020) Xiaoping Han et al. NATURE
- Single-Cell and Population Transcriptomics Reveal Pan-epithelial Remodeling in Type 2-High Asthma
- (2020) Nathan D. Jackson et al. Cell Reports
- Dynamic cell transition and immune response landscapes of axolotl limb regeneration revealed by single-cell analysis
- (2020) Hanbo Li et al. Protein & Cell
- Multi-organ transcriptomic landscape of Ambystoma velasci metamorphosis
- (2020) Palacios-Martínez Janet et al. DEVELOPMENTAL BIOLOGY
- A comparison of the ultrastructure of the cornea of the pre- and post-metamorphic axolotl (Ambystoma mexicanum, Amphibia)
- (2020) Shaun P. Collin et al. EXPERIMENTAL EYE RESEARCH
- The single-cell transcriptional landscape of mammalian organogenesis
- (2019) Junyue Cao et al. NATURE
- A chromosome-scale assembly of the axolotl genome
- (2019) Jeramiah J. Smith et al. GENOME RESEARCH
- Stem cell competition orchestrates skin homeostasis and ageing
- (2019) Nan Liu et al. NATURE
- DoubletFinder: Doublet Detection in Single-Cell RNA Sequencing Data Using Artificial Nearest Neighbors
- (2019) Christopher S. McGinnis et al. Cell Systems
- Droplet-based combinatorial indexing for massive-scale single-cell chromatin accessibility
- (2019) Caleb A. Lareau et al. NATURE BIOTECHNOLOGY
- Comparison of protein expression profile of limb regeneration between neotenic and metamorphic axolotl
- (2019) Mustafa Sibai et al. BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
- Advancements to the Axolotl Model for Regeneration and Aging
- (2019) Warren A. Vieira et al. GERONTOLOGY
- An ultra high-throughput method for single-cell joint analysis of open chromatin and transcriptome
- (2019) Chenxu Zhu et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- CD109 acts as a gatekeeper of the epithelial trait by suppressing epithelial to mesenchymal transition in squamous cell carcinoma cells in vitro
- (2019) Shufeng Zhou et al. Scientific Reports
- Single cell transcriptomic profiling of large intestinal enteroendocrine cells in mice – Identification of selective stimuli for insulin-like peptide-5 and glucagon-like peptide-1 co-expressing cells
- (2019) Lawrence J. Billing et al. Molecular Metabolism
- Mapping the Mouse Cell Atlas by Microwell-Seq
- (2018) Xiaoping Han et al. CELL
- Gata4-Dependent Differentiation of c-Kit+Derived Endothelial Cells Underlies Artefactual Cardiomyocyte Regeneration in the Heart
- (2018) Bryan D. Maliken et al. CIRCULATION
- Transcriptional landscapes of Axolotl ( Ambystoma mexicanum )
- (2018) Juan Caballero-Pérez et al. DEVELOPMENTAL BIOLOGY
- Forever young: Endocrinology of paedomorphosis in the Mexican axolotl ( Ambystoma mexicanum )
- (2018) Bert De Groef et al. GENERAL AND COMPARATIVE ENDOCRINOLOGY
- Single-cell profiling of the developing mouse brain and spinal cord with split-pool barcoding
- (2018) Alexander B. Rosenberg et al. SCIENCE
- Characterizing the replicability of cell types defined by single cell RNA-sequencing data using MetaNeighbor
- (2018) Megan Crow et al. Nature Communications
- Author Correction: The axolotl genome and the evolution of key tissue formation regulators
- (2018) Sergej Nowoshilow et al. NATURE
- Experimentally induced metamorphosis in highly regenerative axolotl (ambystoma mexicanum) under constant diet restructures microbiota
- (2018) Turan Demircan et al. Scientific Reports
- Endangered species recovery: A resource allocation problem
- (2018) Leah R. Gerber et al. SCIENCE
- Transcriptomic landscape of the blastema niche in regenerating adult axolotl limbs at single-cell resolution
- (2018) Nicholas D. Leigh et al. Nature Communications
- Neoteny, Prolongation of Youth: From Naked Mole Rats to “Naked Apes” (Humans)
- (2017) Vladimir P. Skulachev et al. PHYSIOLOGICAL REVIEWS
- Comprehensive single-cell transcriptional profiling of a multicellular organism
- (2017) Junyue Cao et al. SCIENCE
- A Tissue-Mapped Axolotl De Novo Transcriptome Enables Identification of Limb Regeneration Factors
- (2017) Donald M. Bryant et al. Cell Reports
- The anti-tumorigenic activity of A2M—A lesson from the naked mole-rat
- (2017) Susanne Kurz et al. PLoS One
- A histological atlas of the tissues and organs of neotenic and metamorphosed axolotl
- (2016) Turan Demircan et al. ACTA HISTOCHEMICA
- Tissue- and cell-specific localization of galectins, β-galactose-binding animal lectins, and their potential functions in health and disease
- (2016) Junko Nio-Kobayashi ANATOMICAL SCIENCE INTERNATIONAL
- Could we also be regenerative superheroes, like salamanders?
- (2016) Alessandra Dall'Agnese et al. BIOESSAYS
- SLICE: determining cell differentiation and lineage based on single cell entropy
- (2016) Minzhe Guo et al. NUCLEIC ACIDS RESEARCH
- Matrix metalloproteinase (MMP)-19-deficient fibroblasts display a profibrotic phenotype
- (2015) Paul Jara et al. AMERICAN JOURNAL OF PHYSIOLOGY-LUNG CELLULAR AND MOLECULAR PHYSIOLOGY
- Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets
- (2015) Evan Z. Macosko et al. CELL
- Spatial reconstruction of single-cell gene expression data
- (2015) Rahul Satija et al. NATURE BIOTECHNOLOGY
- Charting the human proteome: Understanding disease using a tissue-based atlas
- (2015) M. Uhlen et al. SCIENCE
- A network comprising short and long noncoding RNAs and RNA helicase controls mouse retina architecture
- (2015) Jacek Krol et al. Nature Communications
- A robust transcriptional program in newts undergoing multiple events of lens regeneration throughout their lifespan
- (2015) Konstantinos Sousounis et al. eLife
- HTSeq--a Python framework to work with high-throughput sequencing data
- (2014) S. Anders et al. BIOINFORMATICS
- Estrogen promotes Leydig cell engulfment by macrophages in male infertility
- (2014) Wanpeng Yu et al. JOURNAL OF CLINICAL INVESTIGATION
- featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
- (2013) Y. Liao et al. BIOINFORMATICS
- Systematic Identification and Characterization of Novel Human Skin-Associated Genes Encoding Membrane and Secreted Proteins
- (2013) Peter Arne Gerber et al. PLoS One
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Keratin dressings speed epithelialization of deep partial-thickness wounds
- (2012) Patricia M. Pechter et al. WOUND REPAIR AND REGENERATION
- Dry Eye Symptoms Are Increased in Mice Deficient in Phospholipid Transfer Protein (PLTP)
- (2011) Niko L. Setälä et al. AMERICAN JOURNAL OF PATHOLOGY
- Regulation of the Wip1 phosphatase and its effects on the stress response Julie Lowe, Hyukjin Cha, Mi-Ok Lee, Sharlyn J. Mazur, Ettore Appella, Albert J. Fornace Jr.
- (2011) Julie Lowe Frontiers in Bioscience-Landmark
- Integrative genomics viewer
- (2011) James T Robinson et al. NATURE BIOTECHNOLOGY
- Chromogranin/secretogranin proteins in murine heart: myocardial production of chromogranin A fragment catestatin (Chga364–384)
- (2010) Nilima Biswas et al. CELL AND TISSUE RESEARCH
- Long pentraxin PTX3 deficiency worsens LPS-induced acute lung injury
- (2010) Bing Han et al. INTENSIVE CARE MEDICINE
- The Mer receptor tyrosine kinase is expressed on discrete macrophage subpopulations and mainly uses Gas6 as its ligand for uptake of apoptotic cells
- (2009) Wen-Hai Shao et al. CLINICAL IMMUNOLOGY
- A model of transcriptional and morphological changes during thyroid hormone-induced metamorphosis of the axolotl
- (2009) Robert B. Page et al. GENERAL AND COMPARATIVE ENDOCRINOLOGY
- ZNF536, a Novel Zinc Finger Protein Specifically Expressed in the Brain, Negatively Regulates Neuron Differentiation by Repressing Retinoic Acid-Induced Gene Transcription
- (2009) Z. Qin et al. MOLECULAR AND CELLULAR BIOLOGY
- Prostaglandins, NSAIDs, and Gastric Mucosal Protection: Why Doesn't the Stomach Digest Itself?
- (2008) John L. Wallace PHYSIOLOGICAL REVIEWS
Create your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create NowBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started