Mitogenomics supports the monophyly of Mysidacea and Peracarida (Malacostraca)

More from less: Genome skimming for nuclear markers for animal phylogenomics, a case study using decapod crustaceans

(2021) Mun Hua Tan et al.   JOURNAL OF CRUSTACEAN BIOLOGY

First Complete Mitochondrial Genome of a Tanaidacean Crustacean (Arctotanais alascensis)

(2021) Keiichi Kakui et al.   ZOOLOGICAL SCIENCE

Parsimony analysis of phylogenomic datasets (I): scripts and guidelines for using TNT (Tree Analysis using New Technology)

(2021) Ambrosio Torres et al.   CLADISTICS

What Is an “Arachnid”? Consensus, Consilience, and Confirmation Bias in the Phylogenetics of Chelicerata

(2021) Prashant P. Sharma et al.   Diversity-Basel

Major Revisions in Arthropod Phylogeny Through Improved Supermatrix, With Support for Two Possible Waves of Land Invasion by Chelicerates

(2020) Katherine E Noah et al.   Evolutionary Bioinformatics

On the shoulder of giants: Mitogenome recovery from non‐targeted genome projects for phylogenetic inference and molecular evolution studies

(2020) Silvia Adrián‐Serrano et al.   JOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH

Mitogenome phylogenetics in the genus Palaemon (Crustacea: Decapoda) sheds light on species crypticism in the rockpool shrimp P. elegans

(2020) Inés González-Castellano et al.   PLoS One

Locomotion in Anaspides (Anaspidacea, Malacostraca) – insights from a morpho-functional study of thoracopods with some observations on swimming and walking

(2020) Markus Grams et al.   ZOOLOGY

Comparative mitogenomics of the Decapoda reveals evolutionary heterogeneity in architecture and composition

(2019) Mun Hua Tan et al.   Scientific Reports

Improved annotation of protein-coding genes boundaries in metazoan mitochondrial genomes

(2019) Alexander Donath et al.   NUCLEIC ACIDS RESEARCH

A new Southern Ocean species in the remarkable and rare amphipod family Podosiridae (Crustacea: Amphipoda) questions existing systematic hypotheses

(2019) Oliver S Ashford et al.   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

(2018) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

(2018) Andrew Rambaut et al.   SYSTEMATIC BIOLOGY

Tetraconatan phylogeny with special focus on Malacostraca and Branchiopoda: highlighting the strength of taxon-specific matrices in phylogenomics

(2018) Martin Schwentner et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

TNT version 1.5, including a full implementation of phylogenetic morphometrics

(2016) Pablo A. Goloboff et al.   CLADISTICS

Mitochondrial metagenomics: letting the genes out of the bottle

(2016) Alex Crampton-Platt et al.   GigaScience

Phylomitogenomics of Malacostraca (Arthropoda: Crustacea)

(2015) Xin Shen et al.   ACTA OCEANOLOGICA SINICA

The complete mitochondrial genome of the mysid shrimp,Neomysis japonica(Crustacea, Malacostraca, Mysida)

(2015) Ji-Hun Song et al.   Mitochondrial DNA

Taxonomic Review of the Orders Mysida and Stygiomysida (Crustacea, Peracarida)

(2015) Kenneth Meland et al.   PLoS One

The complete mitogenome of the hermit crab Clibanarius infraspinatus (Hilgendorf, 1869), (Crustacea; Decapoda; Diogenidae) – a new gene order for the Decapoda

(2015) Huan You Gan et al.   Mitochondrial DNA Part A

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

(2012) Y. Peng et al.   BIOINFORMATICS

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Quality control and preprocessing of metagenomic datasets

(2011) R. Schmieder et al.   BIOINFORMATICS

Pancrustacean Phylogeny in the Light of New Phylogenomic Data: Support for Remipedia as the Possible Sister Group of Hexapoda

(2011) B. M. von Reumont et al.   MOLECULAR BIOLOGY AND EVOLUTION

Ray: Simultaneous Assembly of Reads from a Mix of High-Throughput Sequencing Technologies

(2010) Sébastien Boisvert et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Feeding, Reproduction, and Development of the Subterranean Peracarid Shrimp Spelaeomysis bottazzii (Lepidomysidae) from a Brackish Well in Apulia (Southeastern italy)

(2010) Antonio P. Ariani et al.   JOURNAL OF CRUSTACEAN BIOLOGY

Review of methodological problems of ‘Computer cladistics' exemplified with a case study on isopod phylogeny (Crustacea: Isopoda)

(2010) J.W. Wägele   JOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH

Eumalacostracan phylogeny and total evidence: limitations of the usual suspects

(2009) Ronald A Jenner et al.   BMC EVOLUTIONARY BIOLOGY

Evolutionary morphology of the circulatory system in Peracarida (Malacostraca; Crustacea)

(2009) Christian S. Wirkner et al.   CLADISTICS

Evolution of the mitochondrial genome of Metazoa as exemplified by comparison of congeneric species

(2008) C Gissi et al.   HEREDITY