Major Revisions in Arthropod Phylogeny Through Improved Supermatrix, With Support for Two Possible Waves of Land Invasion by Chelicerates

A Critical Appraisal of the Placement of Xiphosura (Chelicerata) with Account of Known Sources of Phylogenetic Error

(2019) Jesús A Ballesteros et al.   SYSTEMATIC BIOLOGY

The Phylogeny and Evolutionary History of Arthropods

(2019) Gonzalo Giribet et al.   CURRENT BIOLOGY

Pancrustacean evolution illuminated by taxon-rich genomic-scale data sets with an expanded remipede sampling

(2019) Jesus Lozano-Fernandez et al.   Genome Biology and Evolution

Insights into the 400 million-year-old eyes of giant sea scorpions (Eurypterida) suggest the structure of Palaeozoic compound eyes

(2019) Brigitte Schoenemann et al.   Scientific Reports

DAMBE7: New and Improved Tools for Data Analysis in Molecular Biology and Evolution

(2018) Xuhua Xia   MOLECULAR BIOLOGY AND EVOLUTION

Tetraconatan phylogeny with special focus on Malacostraca and Branchiopoda: highlighting the strength of taxon-specific matrices in phylogenomics

(2018) Martin Schwentner et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Phylogenomics illuminates the backbone of the Myriapoda Tree of Life and reconciles morphological and molecular phylogenies

(2018) Rosa Fernández et al.   Scientific Reports

DAMBE6: New Tools for Microbial Genomics, Phylogenetics, and Molecular Evolution

(2017) Xuhua Xia   JOURNAL OF HEREDITY

Comparative morphology of the hemolymph vascular system in Uropygi and Amblypygi (Arachnida): Complex correspondences support Arachnopulmonata

(2016) B.-J. Klußmann-Fricke et al.   JOURNAL OF MORPHOLOGY

PhyPA: Phylogenetic method with pairwise sequence alignment outperforms likelihood methods in phylogenetics involving highly diverged sequences

(2016) Xuhua Xia   MOLECULAR PHYLOGENETICS AND EVOLUTION

A molecular palaeobiological exploration of arthropod terrestrialization

(2016) Jesus Lozano-Fernandez et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Exploring Phylogenetic Relationships within Myriapoda and the Effects of Matrix Composition and Occupancy on Phylogenomic Reconstruction

(2016) Rosa Fernández et al.   SYSTEMATIC BIOLOGY

Evidence of duplicated Hox genes in the most recent common ancestor of extant scorpions

(2015) Prashant P. Sharma et al.   EVOLUTION & DEVELOPMENT

Ancestral whole-genome duplication in the marine chelicerate horseshoe crabs

(2015) N J Kenny et al.   HEREDITY

The evolution of genomic GC content undergoes a rapid reversal within the genus Plasmodium

(2015) Hamid Nikbakht et al.   GENOME

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Phylogenomic Interrogation of Arachnida Reveals Systemic Conflicts in Phylogenetic Signal

(2014) Prashant P. Sharma et al.   MOLECULAR BIOLOGY AND EVOLUTION

Simultaneous Bayesian Estimation of Alignment and Phylogeny under a Joint Model of Protein Sequence and Structure

(2014) Joseph L. Herman et al.   MOLECULAR BIOLOGY AND EVOLUTION

A transcriptome approach to ecdysozoan phylogeny

(2014) Janus Borner et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Phylogenetic position of Myriapoda revealed by 454 transcriptome sequencing

(2014) Peter Rehm et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Hox gene duplications correlate with posterior heteronomy in scorpions

(2014) P. P. Sharma et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Three-dimensional reconstruction and the phylogeny of extinct chelicerate orders

(2014) Russell J. Garwood et al.   PeerJ

Evolution of Hox gene clusters in deuterostomes

(2013) Juan Pascual-Anaya et al.   BMC DEVELOPMENTAL BIOLOGY

Babes in the wood – a unique window into sea scorpion ontogeny

(2013) James C Lamsdell et al.   BMC EVOLUTIONARY BIOLOGY

DAMBE5: A Comprehensive Software Package for Data Analysis in Molecular Biology and Evolution

(2013) Xuhua Xia   MOLECULAR BIOLOGY AND EVOLUTION

Arthropod Phylogenetics in Light of Three Novel Millipede (Myriapoda: Diplopoda) Mitochondrial Genomes with Comments on the Appropriateness of Mitochondrial Genome Sequence Data for Inferring Deep Level Relationships

(2013) Michael S. Brewer et al.   PLoS One

Arthropod fossil data increase congruence of morphological and molecular phylogenies

(2013) David A. Legg et al.   Nature Communications

DNA Replication and Strand Asymmetry in Prokaryotic and Mitochondrial Genomes

(2012) Xuhua Xia   CURRENT GENOMICS

Class of Multiple Sequence Alignment Algorithm Affects Genomic Analysis

(2012) B. P. Blackburne et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phylotranscriptomics to Bring the Understudied into the Fold: Monophyletic Ostracoda, Fossil Placement, and Pancrustacean Phylogeny

(2012) Todd H. Oakley et al.   MOLECULAR BIOLOGY AND EVOLUTION

Nearly complete rRNA genes from 371 Animalia: Updated structure-based alignment and detailed phylogenetic analysis

(2012) Jon Mallatt et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Redescription and palaeobiology of Palaeoscorpius devonicus Lehmann, 1944 from the Lower Devonian Hunsrück Slate of Germany

(2012) GABRIELE KÜHL et al.   PALAEONTOLOGY

Resolving Discrepancy between Nucleotides and Amino Acids in Deep-Level Arthropod Phylogenomics: Differentiating Serine Codons in 21-Amino-Acid Models

(2012) Andreas Zwick et al.   PLoS One

Serine Codon-Usage Bias in Deep Phylogenomics: Pancrustacean Relationships as a Case Study

(2012) Omar Rota-Stabelli et al.   SYSTEMATIC BIOLOGY

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Pancrustacean Phylogeny in the Light of New Phylogenomic Data: Support for Remipedia as the Possible Sister Group of Hexapoda

(2011) B. M. von Reumont et al.   MOLECULAR BIOLOGY AND EVOLUTION

Sperm carriers in Silurian sea scorpions

(2011) Carsten Kamenz et al.   NATURWISSENSCHAFTEN

Arthropod molecular divergence times and the Cambrian origin of pentastomids

(2011) Kate L. Sanders et al.   SYSTEMATICS AND BIODIVERSITY

A Phylogenomic Approach to Resolve the Arthropod Tree of Life

(2010) K. Meusemann et al.   MOLECULAR BIOLOGY AND EVOLUTION

Arthropod relationships revealed by phylogenomic analysis of nuclear protein-coding sequences

(2010) Jerome C. Regier et al.   NATURE

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

A 454 sequencing approach for large scale phylogenomic analysis of the common emperor scorpion (Pandinus imperator)

(2009) Falko Roeding et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

GC skew in protein-coding genes between the leading and lagging strands in bacterial genomes: New substitution models incorporating strand bias

(2008) Antonio Marín et al.   JOURNAL OF THEORETICAL BIOLOGY

Alignment Uncertainty and Genomic Analysis

(2008) K. M. Wong et al.   SCIENCE

Resolving Arthropod Phylogeny: Exploring Phylogenetic Signal within 41 kb of Protein-Coding Nuclear Gene Sequence

(2008) Jerome C. Regier et al.   SYSTEMATIC BIOLOGY

Uncertainty in homology inferences: Assessing and improving genomic sequence alignment

(2007) G. Lunter et al.   GENOME RESEARCH