Interleukin-17 governs hypoxic adaptation of injured epithelium

Integrating microarray-based spatial transcriptomics and single-cell RNA-seq reveals tissue architecture in pancreatic ductal adenocarcinomas

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Defining Epidermal Basal Cell States during Skin Homeostasis and Wound Healing Using Single-Cell Transcriptomics

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The IL-17 Family of Cytokines in Health and Disease

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IL-17 metabolically reprograms activated fibroblastic reticular cells for proliferation and survival

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Metabolic regulation of cell growth and proliferation

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Long-term expansion and differentiation of adult murine epidermal stem cells in 3D organoid cultures

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Activation of STAT3 signaling is mediated by TFF1 silencing in gastric neoplasia

(2019) Mohammed Soutto et al.   Nature Communications

Long-Term Culture Captures Injury-Repair Cycles of Colonic Stem Cells

(2019) Yi Wang et al.   CELL

MAIT cells are imprinted by the microbiota in early life and promote tissue repair

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Integrating single-cell transcriptomic data across different conditions, technologies, and species

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Interleukin-2 induces the in vitro maturation of human pluripotent stem cell-derived intestinal organoids

(2018) Kwang Bo Jung et al.   Nature Communications

Two to Tango: Dialog between Immunity and Stem Cells in Health and Disease

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IL-17R–EGFR axis links wound healing to tumorigenesis in Lrig1+ stem cells

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Commensal-specific T cell plasticity promotes rapid tissue adaptation to injury

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Homeostatic Immunity and the Microbiota

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Inflammatory memory sensitizes skin epithelial stem cells to tissue damage

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Simultaneous epitope and transcriptome measurement in single cells

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Defining stem cell dynamics and migration during wound healing in mouse skin epidermis

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RORγt, a multitask nuclear receptor at mucosal surfaces

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Exit Strategies: S1P Signaling and T Cell Migration

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Glycolysis is the primary bioenergetic pathway for cell motility and cytoskeletal remodeling in human prostate and breast cancer cells

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Paneth cell extrusion and release of antimicrobial products is directly controlled by immune cell–derived IFN-γ

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Stress, Inflammation, and Defense of Homeostasis

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Wound repair and regeneration: Mechanisms, signaling, and translation

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Ex vivo culture of intestinal crypt organoids as a model system for assessing cell death induction in intestinal epithelial cells and enteropathy

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Epithelialization in Wound Healing: A Comprehensive Review

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featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

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STAR: ultrafast universal RNA-seq aligner

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Hypoxia-Inducible Factors in Physiology and Medicine

(2012) Gregg L. Semenza   CELL

mTOR Signaling in Growth Control and Disease

(2012) Mathieu Laplante et al.   CELL

clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters

(2012) Guangchuang Yu et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Loss of epidermal hypoxia-inducible factor-1α accelerates epidermal aging and affects re-epithelialization in human and mouse

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Digoxin and its derivatives suppress TH17 cell differentiation by antagonizing RORγt activity

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Hypoxia-Inducible Factors and the Response to Hypoxic Stress

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Ancient Atmospheres and the Evolution of Oxygen Sensing Via the Hypoxia-Inducible Factor in Metazoans

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Mechanisms Underlying Lineage Commitment and Plasticity of Helper CD4+ T Cells

(2010) J. J. O'Shea et al.   SCIENCE

The Akt/mTOR Pathway Assures the Synthesis of HIF-1α Protein in a Glucose- and Reoxygenation-dependent Manner in Irradiated Tumors

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