Sustained changes in digestive physiology and microbiome across sequential generations of zebrafish fed different diets

Comparative transcriptomics reveal tissue level specialization towards diet in prickleback fishes

(2022) Michelle J. Herrera et al.   Journal of Comparative Physiology B-Biochemical Systems and Environmental Physiology

Distinct microbiota composition and fermentation products indicate functional compartmentalization in the hindgut of a marine herbivorous fish

(2022) Bikiran Pardesi et al.   MOLECULAR ECOLOGY

A Metagenomics Investigation of Intergenerational Effects of Non-nutritive Sweeteners on Gut Microbiome

(2022) Weilan Wang et al.   Frontiers in Nutrition

Reduced physiological plasticity in a fish adapted to stable temperatures

(2022) Rachael Morgan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Possible Dietary Effects of Insect-Based Diets across Zebrafish (Danio rerio) Generations: A Multidisciplinary Study on the Larval Phase

(2021) Matteo Zarantoniello et al.   Animals

Zebrafish, Danio rerio, Skin Mucus Harbors a Distinct Bacterial Community Dominated by Actinobacteria

(2021) Wren Wakeman et al.   Zebrafish

Genomic and biochemical evidence of dietary adaptation in a marine herbivorous fish

(2020) Joseph Heras et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Rapid dietary shift in Podarcis siculus resulted in localized changes in gut function

(2020) Beck Ari Wehrle et al.   PHYSIOLOGICAL AND BIOCHEMICAL ZOOLOGY

The effects of exopolysaccharides and exopolysaccharide-producing Lactobacillus on the intestinal microbiome of zebrafish (Danio rerio)

(2020) Chenchen Ma et al.   BMC MICROBIOLOGY

Hamiltonian patterns of age-dependent adaptation to novel environments

(2020) Grant A. Rutledge et al.   PLoS One

Nutritional intervention through dietary vegetable proteins and lipids to gilthead sea bream (Sparus aurata) broodstock affects the offspring utilization of a low fishmeal/fish oil diet

(2019) Hanlin Xu et al.   AQUACULTURE

Nutritional programming in fishes: insights from mammalian studies

(2019) Zhenxin Hou et al.   REVIEWS IN FISH BIOLOGY AND FISHERIES

Fast acquisition of a polysaccharide fermenting gut microbiome by juvenile green turtles Chelonia mydas after settlement in coastal habitats

(2018) Patricia Campos et al.   Microbiome

Seagrass digestion by a notorious ‘carnivore’

(2018) Samantha C. Leigh et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Broadscale Ecological Patterns Are Robust to Use of Exact Sequence Variants versus Operational Taxonomic Units

(2018) Sydney I. Glassman et al.   mSphere

Feeding Rapidly Alters Microbiome Composition and Gene Transcription in the Clownfish Gut

(2018) D. Joshua Parris et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Bacterial microbiome of the chigger mite Leptotrombidium imphalum varies by life stage and infection with the scrub typhus pathogen Orientia tsutsugamushi

(2018) Loganathan Ponnusamy et al.   PLoS One

Gut microbiome of juvenile coregonid fishes: comparison of sympatric species and their F1 hybrids

(2017) NataliaL. Belkova et al.   Fundamental and Applied Limnology

Exact sequence variants should replace operational taxonomic units in marker-gene data analysis

(2017) Benjamin J Callahan et al.   ISME Journal

The effects of protein and fiber content on gut structure and function in zebrafish (Danio rerio)

(2017) Samantha C. Leigh et al.   JOURNAL OF COMPARATIVE PHYSIOLOGY B-BIOCHEMICAL SYSTEMIC AND ENVIRONMENTAL PHYSIOLOGY

Intergenerational transfer of antibiotic-perturbed microbiota enhances colitis in susceptible mice

(2017) Anjelique F. Schulfer et al.   Nature Microbiology

Dietary replacement of fish meal by soy products (soybean meal and isolated soy protein) in silvery-black porgy juveniles ( Sparidentex hasta )

(2016) Morteza Yaghoubi et al.   AQUACULTURE

Cellular adhesiveness and cellulolytic capacity in Anaerolineae revealed by omics-based genome interpretation

(2016) Yu Xia et al.   Biotechnology for Biofuels

Differential responses of the gut transcriptome to plant protein diets in farmed Atlantic salmon

(2016) Elżbieta Król et al.   BMC GENOMICS

Clostridium butyricum : from beneficial to a new emerging pathogen

(2016) N. Cassir et al.   CLINICAL MICROBIOLOGY AND INFECTION

Di- and tripeptide transport in vertebrates: the contribution of teleost fish models

(2016) Tiziano Verri et al.   JOURNAL OF COMPARATIVE PHYSIOLOGY B-BIOCHEMICAL SYSTEMIC AND ENVIRONMENTAL PHYSIOLOGY

Physiological and microbial adjustments to diet quality permit facultative herbivory in an omnivorous lizard

(2016) Kevin D. Kohl et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Current knowledge and perspectives of Paenibacillus: a review

(2016) Elliot Nicholas Grady et al.   Microbial Cell Factories

The gut microbiome and degradation enzyme activity of wild freshwater fishes influenced by their trophic levels

(2016) Han Liu et al.   Scientific Reports

The Complete Genome Sequence of the Nicotine-Degrading Bacterium Shinella sp. HZN7

(2016) Jiguo Qiu et al.   Frontiers in Microbiology

Effect of vegetable based diets on growth, intestinal morphology, activity of intestinal enzymes and haematological stress indicators in meagre (Argyrosomus regius)

(2015) Laura Ribeiro et al.   AQUACULTURE

A new view of the fish gut microbiome: Advances from next-generation sequencing

(2015) Mahdi Ghanbari et al.   AQUACULTURE

Comparison of the gut microbiomes of 12 bony fish and 3 shark species

(2015) CE Givens et al.   MARINE ECOLOGY PROGRESS SERIES

The impact of rearing environment on the development of gut microbiota in tilapia larvae

(2015) Christos Giatsis et al.   Scientific Reports

Comparison of the gut microbiomes of 12 bony fish and 3 shark species

(2015) CE Givens et al.   MARINE ECOLOGY PROGRESS SERIES

Improved Bacterial 16S rRNA Gene (V4 and V4-5) and Fungal Internal Transcribed Spacer Marker Gene Primers for Microbial Community Surveys

(2015) William Walters et al.   mSystems

Physiological responses to short-term fasting among herbivorous, omnivorous, and carnivorous fishes

(2014) Ryan D. Day et al.   JOURNAL OF COMPARATIVE PHYSIOLOGY B-BIOCHEMICAL SYSTEMIC AND ENVIRONMENTAL PHYSIOLOGY

The microbial metabolite butyrate regulates intestinal macrophage function via histone deacetylase inhibition

(2014) Pamela V. Chang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Oligotyping reveals differences between gut microbiomes of free-ranging sympatric Namibian carnivores (Acinonyx jubatus, Canis mesomelas) on a bacterial species-like level

(2014) Sebastian Menke et al.   Frontiers in Microbiology

Evolution of ontogenetic dietary shifts and associated gut features in prickleback fishes (Teleostei: Stichaeidae)

(2013) D.P. German et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY B-BIOCHEMISTRY & MOLECULAR BIOLOGY

Mycobacteriosis in Zebrafish Colonies

(2013) C. M. Whipps et al.   ILAR JOURNAL

Shaping development through mechanical strain: the transcriptional basis of diet-induced phenotypic plasticity in a cichlid fish

(2013) Helen M. Gunter et al.   MOLECULAR ECOLOGY

Comparison of high-protein soybean meal and commercial soybean meal partly replacing fish meal on the activities of digestive enzymes and aminotransferases in juvenile Japanese seabass,Lateolabrax japonicus(Cuvier, 1828)

(2012) Yan Li et al.   AQUACULTURE RESEARCH

The genome of the ammonia-oxidizingCandidatusNitrososphaera gargensis: insights into metabolic versatility and environmental adaptations

(2012) Anja Spang et al.   ENVIRONMENTAL MICROBIOLOGY

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Environmental and ecological factors that shape the gut bacterial communities of fish: a meta-analysis

(2012) KAREN E. SULLAM et al.   MOLECULAR ECOLOGY

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Housing Conditions Differentially Affect Physiological and Behavioural Stress Responses of Zebrafish, as well as the Response to Anxiolytics

(2012) Matthew O. Parker et al.   PLoS One

Effects of different levels of soybean meal inclusion in replacement for fish meal on growth, digestive enzymes and transaminase activities in practical diets for juvenile tilapia, Oreochromis niloticus×O. aureus

(2011) Shimei Lin et al.   ANIMAL FEED SCIENCE AND TECHNOLOGY

Contributions of direct incorporation from diet and microbial amino acids to protein synthesis in Nile tilapia

(2011) Seth D. Newsome et al.   FUNCTIONAL ECOLOGY

Evidence for a core gut microbiota in the zebrafish

(2011) Guus Roeselers et al.   ISME Journal

Zebrafish as a model organism for nutrition and growth: towards comparative studies of nutritional genomics applied to aquacultured fishes

(2011) Pilar E. Ulloa et al.   REVIEWS IN FISH BIOLOGY AND FISHERIES

Feast to famine: The effects of food quality and quantity on the gut structure and function of a detritivorous catfish (Teleostei: Loricariidae)

(2009) Donovan P. German et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY

Associations between species and groups of sites: indices and statistical inference

(2009) Miquel De Cáceres et al.   ECOLOGY

Diet predicts intestine length in Lake Tanganyika’s cichlid fishes

(2009) Catherine E. Wagner et al.   FUNCTIONAL ECOLOGY

Digestive enzyme activities and gastrointestinal fermentation in wood-eating catfishes

(2009) Donovan P. German et al.   JOURNAL OF COMPARATIVE PHYSIOLOGY B-BIOCHEMICAL SYSTEMIC AND ENVIRONMENTAL PHYSIOLOGY

Evolution of Herbivory in a Carnivorous Clade of Minnows (Teleostei: Cyprinidae): Effects on Gut Size and Digestive Physiology

(2009) Donovan P. German et al.   PHYSIOLOGICAL AND BIOCHEMICAL ZOOLOGY

Modifications of digestive enzymes in trout (Oncorhynchus mykiss) and sea bream (Sparus aurata) in response to dietary fish meal replacement by plant protein sources

(2008) E. Santigosa et al.   AQUACULTURE