In Vitro and In Silico Based Approaches to Identify Potential Novel Bacteriocins from the Athlete Gut Microbiome of an Elite Athlete Cohort

Fusobacterium nucleatum Promotes the Progression of Colorectal Cancer Through Cdk5-Activated Wnt/β-Catenin Signaling

(2021) Xiang Li et al.   Frontiers in Microbiology

Drastic Effects on the Microbiome of a Young Rower Engaged in High-Endurance Exercise After a Month Usage of a Dietary Fiber Supplement

(2021) Mariliis Jaago et al.   Frontiers in Nutrition

Gut microbiota of elite female football players is not altered during an official international tournament

(2021) Catarina B. Oliveira et al.   SCANDINAVIAN JOURNAL OF MEDICINE & SCIENCE IN SPORTS

Comparative genomics of multidrug-resistant Enterococcus spp. isolated from wastewater treatment plants

(2020) Haley Sanderson et al.   BMC MICROBIOLOGY

Potential Use of Biotherapeutic Bacteria to Target Colorectal Cancer-Associated Taxa

(2020) Garreth W. Lawrence et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0

(2020) Francesco Asnicar et al.   Nature Communications

Bacteria producing antimicrobials against Clostridium difficile isolated from human stool

(2020) Rania Abdelmonem Khattab et al.   ANAEROBE

Successful development of bacteriocins into therapeutic formulation for treatment of MRSA-skin infection in a murine model.

(2020) Kirill V. Ovchinnikov et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Quorum Sensing, Biofilm, and Intestinal Mucosal Barrier: Involvement the Role of Probiotic

(2020) Zhaoxi Deng et al.   Frontiers in Cellular and Infection Microbiology

Bacteriocins From LAB and Other Alternative Approaches for the Control of Clostridium and Clostridiodes Related Gastrointestinal Colitis

(2020) Svetoslav D. Todorov et al.   Frontiers in Bioengineering and Biotechnology

Genomic and Functional Characterization of Enterococcus mundtii QAUEM2808, Isolated From Artisanal Fermented Milk Product Dahi

(2019) Farah Nawaz et al.   Frontiers in Microbiology

The combination of sport and sport-specific diet is associated with characteristics of gut microbiota: an observational study

(2019) Lae-Guen Jang et al.   Journal of the International Society of Sports Nutrition

Meta-omics analysis of elite athletes identifies a performance-enhancing microbe that functions via lactate metabolism

(2019) Jonathan Scheiman et al.   NATURE MEDICINE

Detection of Virulence Genes in Multidrug Resistant Enterococci Isolated from Feedlots Dairy and Beef Cattle: Implications for Human Health and Food Safety

(2019) Frank Eric Tatsing Foka et al.   Biomed Research International

MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies

(2019) Dongwan D. Kang et al.   PeerJ

Comparative genomic analysis revealed great plasticity and environmental adaptation of the genomes of Enterococcus faecium

(2019) Zhi Zhong et al.   BMC GENOMICS

Distinct microbiome composition and metabolome exists across subgroups of elite Irish athletes

(2019) Ciara M. O’Donovan et al.   JOURNAL OF SCIENCE AND MEDICINE IN SPORT

GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database

(2019) Pierre-Alain Chaumeil et al.   BIOINFORMATICS

Clostridium difficile and One Health

(2019) S.C. Lim et al.   CLINICAL MICROBIOLOGY AND INFECTION

BAGEL4: a user-friendly web server to thoroughly mine RiPPs and bacteriocins

(2018) Auke J van Heel et al.   NUCLEIC ACIDS RESEARCH

Response of Gut Microbiota to Metabolite Changes Induced by Endurance Exercise

(2018) Xia Zhao et al.   Frontiers in Microbiology

A Prospective Metagenomic and Metabolomic Analysis of the Impact of Exercise and/or Whey Protein Supplementation on the Gut Microbiome of Sedentary Adults

(2018) Owen Cronin et al.   mSystems

metaSPAdes: a new versatile metagenomic assembler

(2017) Sergey Nurk et al.   GENOME RESEARCH

Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

(2017) Robert M Bowers et al.   NATURE BIOTECHNOLOGY

Community characteristics of the gut microbiomes of competitive cyclists

(2017) Lauren M. Petersen et al.   Microbiome

Differences in gut microbiota profile between women with active lifestyle and sedentary women

(2017) Carlo Bressa et al.   PLoS One

Antibacterial effects of Lactobacillus and bacteriocin PLNC8 αβ on the periodontal pathogen Porphyromonas gingivalis

(2016) Hazem Khalaf et al.   BMC MICROBIOLOGY

The Potential of Class II Bacteriocins to Modify Gut Microbiota to Improve Host Health

(2016) Özgün C. O. Umu et al.   PLoS One

Identification, Characterization, and Three-Dimensional Structure of the Novel Circular Bacteriocin, Enterocin NKR-5-3B, from Enterococcus faecium

(2015) Kohei Himeno et al.   BIOCHEMISTRY

In silico identification of bacteriocin gene clusters in the gastrointestinal tract, based on the Human Microbiome Project’s reference genome database

(2015) Calum J. Walsh et al.   BMC MICROBIOLOGY

Fusobacterium nucleatum: a commensal-turned pathogen

(2015) Yiping W Han   CURRENT OPINION IN MICROBIOLOGY

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

(2015) Donovan H. Parks et al.   GENOME RESEARCH

Probiotics modify human intestinal mucosa-associated microbiota in patients with colorectal cancer

(2015) ZHIGUANG GAO et al.   Molecular Medicine Reports

Bacteriocin production augments niche competition by enterococci in the mammalian gastrointestinal tract

(2015) Sushma Kommineni et al.   NATURE

Common occurrence of antibacterial agents in human intestinal microbiota

(2015) Fatima Drissi et al.   Frontiers in Microbiology

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Diversity and dynamics of bacteriocins from human microbiome

(2014) Jinshui Zheng et al.   ENVIRONMENTAL MICROBIOLOGY

Exercise and associated dietary extremes impact on gut microbial diversity

(2014) Siobhan F Clarke et al.   GUT

Inhibition of Bacillus cereus Strains by Antimicrobial Metabolites from Lactobacillus johnsonii CRL1647 and Enterococcus faecium SM21

(2014) M. Cecilia Soria et al.   Probiotics and Antimicrobial Proteins

The Comprehensive Antibiotic Resistance Database

(2013) Andrew G. McArthur et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Prevalence of the aminoglycoside phosphotransferase genes aph(3')-IIIa and aph(3')-IIa in Escherichia coli, Enterococcus faecalis, Enterococcus faecium, Pseudomonas aeruginosa, Salmonella enterica subsp. enterica and Staphylococcus aureus isolates in Austria

(2013) M. Woegerbauer et al.   JOURNAL OF MEDICAL MICROBIOLOGY

Gut Microbiota Composition in Male Rat Models under Different Nutritional Status and Physical Activity and Its Association with Serum Leptin and Ghrelin Levels

(2013) María Isabel Queipo-Ortuño et al.   PLoS One

Optimizing hybrid assembly of next-generation sequence data from Enterococcus faecium: a microbe with highly divergent genome

(2012) Yajun Wang et al.   BMC Systems Biology

Enterococci of animal origin and their significance for public health

(2012) A.M. Hammerum   CLINICAL MICROBIOLOGY AND INFECTION

Isolation and characterization of bacteriocin-producing bacteria from the intestinal microbiota of elderly Irish subjects

(2012) B. Lakshminarayanan et al.   JOURNAL OF APPLIED MICROBIOLOGY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

New Insights in Gut Microbiota Establishment in Healthy Breast Fed Neonates

(2012) Ted Jost et al.   PLoS One

Commensal gut bacteria: distribution of Enterococcus species and prevalence of Escherichia coli phylogenetic groups in animals and humans in Portugal

(2011) Nuno Silva et al.   ANNALS OF MICROBIOLOGY

Distribution of Antimicrobial Resistance and Virulence Genes in Enterococcus spp. and Characterization of Isolates from Broiler Chickens

(2010) M. S. Diarra et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Identification of Lactobacillus plantarum genes modulating the cytokine response of human peripheral blood mononuclear cells

(2010) Saskia van Hemert et al.   BMC MICROBIOLOGY

BACTIBASE second release: a database and tool platform for bacteriocin characterization

(2010) Riadh Hammami et al.   BMC MICROBIOLOGY

A human gut microbial gene catalogue established by metagenomic sequencing

(2010) Junjie Qin et al.   NATURE

Thuricin CD, a posttranslationally modified bacteriocin with a narrow spectrum of activity against Clostridium difficile

(2010) M. C. Rea et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Effect of broad- and narrow-spectrum antimicrobials on Clostridium difficile and microbial diversity in a model of the distal colon

(2010) M. C. Rea et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Probiotics in Intestinal and Non-Intestinal Infectious Diseases – Clinical Evidence

(2008) K. Hatakka et al.   CURRENT PHARMACEUTICAL DESIGN

Predominance of a bacteriocin-producing Lactobacillus salivarius component of a five-strain probiotic in the porcine ileum and effects on host immune phenotype

(2008) Maria C. Walsh et al.   FEMS MICROBIOLOGY ECOLOGY

Antimicrobial activity of Enterococcus faecium L50, a strain producing enterocins L50 (L50A and L50B), P and Q, against beer-spoilage lactic acid bacteria in broth, wort (hopped and unhopped), and alcoholic and non-alcoholic lager beers

(2008) Antonio Basanta et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Comparative analysis of genetic diversity and incidence of virulence factors and antibiotic resistance among enterococcal populations from raw fruit and vegetable foods, water and soil, and clinical samples

(2007) Hikmate Abriouel et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY