Soil microbial metabolism on carbon and nitrogen transformation links the crop-residue contribution to soil organic carbon

Network analysis and subsequent culturing reveal keystone taxa involved in microbial litter decomposition dynamics

(2021) Haiping Zheng et al.   SOIL BIOLOGY & BIOCHEMISTRY

Balanced nutrient stoichiometry of organic amendments enhances carbon priming in a poorly structured sodic subsoil

(2020) Yunying Fang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Interactive effects of crop residue quality and nitrogen fertilization on soil organic carbon priming in agricultural soils

(2020) Qian Ma et al.   JOURNAL OF SOILS AND SEDIMENTS

Molecular trade-offs in soil organic carbon composition at continental scale

(2020) Steven J. Hall et al.   Nature Geoscience

Long-term farmyard manure application affects soil organic phosphorus cycling: A combined metagenomic and 33P/14C labelling study

(2020) Qingxu Ma et al.   SOIL BIOLOGY & BIOCHEMISTRY

The Total and Active Bacterial Community of the Chlorolichen Cetraria islandica and Its Response to Long-Term Warming in Sub-Arctic Tundra

(2020) Ingeborg J. Klarenberg et al.   Frontiers in Microbiology

The shift of bacterial community composition magnifies over time in response to different sources of soybean residues

(2019) Tengxiang Lian et al.   APPLIED SOIL ECOLOGY

Contribution and fate of maize residue-15N and urea-15N as affected by N fertilization regime

(2019) Wencheng Ding et al.   PLoS One

Dynamics of maize straw–derived nitrogen in soil aggregates as affected by fertilization

(2019) Yang Wang et al.   JOURNAL OF SOILS AND SEDIMENTS

Soil organic carbon stabilization mechanisms in a subtropical mangrove and salt marsh ecosystems

(2019) Huimin Sun et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Roots of non-woody perennials accelerated long-term soil organic matter decomposition through biological and physical mechanisms

(2019) Jiayu Lu et al.   SOIL BIOLOGY & BIOCHEMISTRY

Balancing nutrient stoichiometry facilitates the fate of wheat residue‑carbon in physically defined soil organic matter fractions

(2019) Yunying Fang et al.   GEODERMA

Soil carbon storage informed by particulate and mineral-associated organic matter

(2019) M. Francesca Cotrufo et al.   Nature Geoscience

Beyond clay: towards an improved set of variables for predicting soil organic matter content

(2018) Craig Rasmussen et al.   BIOGEOCHEMISTRY

OUP accepted manuscript

(2018)   BIOINFORMATICS

Crop residue harvest for bioenergy production and its implications on soil functioning and plant growth: A review

(2018) Maurício Roberto Cherubin et al.   SCIENTIA AGRICOLA

Microbial functional diversity covaries with permafrost thaw-induced environmental heterogeneity in tundra soil

(2017) Mengting M. Yuan et al.   GLOBAL CHANGE BIOLOGY

Microbial association with the dynamics of particulate organic carbon in response to the amendment of elevated CO 2 -derived wheat residue into a Mollisol

(2017) Yanhong Wang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

The fate of soybean residue-carbon links to changes of bacterial community composition in Mollisols differing in soil organic carbon

(2017) Tengxiang Lian et al.   SOIL BIOLOGY & BIOCHEMISTRY

Partial drying accelerates bacterial growth recovery to rewetting

(2017) Annelein Meisner et al.   SOIL BIOLOGY & BIOCHEMISTRY

Enhanced degradation of phenol by Sphingomonas sp. GY2B with resistance towards suboptimal environment through adsorption on kaolinite

(2016) Beini Gong et al.   CHEMOSPHERE

Global biogeography of microbial nitrogen-cycling traits in soil

(2016) Michaeline B. Nelson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Long-term effects of elevated CO 2 on carbon and nitrogen functional capacity of microbial communities in three contrasting soils

(2016) Clayton R. Butterly et al.   SOIL BIOLOGY & BIOCHEMISTRY

Tundra soil carbon is vulnerable to rapid microbial decomposition under climate warming

(2016) Kai Xue et al.   Nature Climate Change

Nitrogen Cycling Potential of a Grassland Litter Microbial Community

(2015) Michaeline B. Nelson et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Carbon input from 13C-labelled soybean residues in particulate organic carbon fractions in a Mollisol

(2015) Tengxiang Lian et al.   BIOLOGY AND FERTILITY OF SOILS

Stability and succession of the rhizosphere microbiota depends upon plant type and soil composition

(2015) Andrzej Tkacz et al.   ISME Journal

The contentious nature of soil organic matter

(2015) Johannes Lehmann et al.   NATURE

Soil aggregation: Influence on microbial biomass and implications for biological processes

(2015) Vadakattu V.S.R. Gupta et al.   SOIL BIOLOGY & BIOCHEMISTRY

Microbial community structure mediates response of soil C decomposition to litter addition and warming

(2015) Courtney A. Creamer et al.   SOIL BIOLOGY & BIOCHEMISTRY

FastRFunctions for Robust Correlations and Hierarchical Clustering

(2015) Peter Langfelder et al.   Journal of Statistical Software

Network analysis reveals that bacteria and fungi form modules that correlate independently with soil parameters

(2014) Alexandre B. de Menezes et al.   ENVIRONMENTAL MICROBIOLOGY

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

Controlling Air Pollution from Straw Burning in China Calls for Efficient Recycling

(2012) Changsheng Qu et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Soil organic matter turnover is governed by accessibility not recalcitrance

(2012) Jennifer A. J. Dungait et al.   GLOBAL CHANGE BIOLOGY

Who is who in litter decomposition? Metaproteomics reveals major microbial players and their biogeochemical functions

(2012) Thomas Schneider et al.   ISME Journal

Metabolic characterization and genes for the conversion of biphenyl in Dyella ginsengisoli LA-4

(2011) Ang Li et al.   BIOTECHNOLOGY AND BIOENGINEERING

Connectance of species interaction networks and conservation value: Is it any good to be well connected?

(2011) Ruben Heleno et al.   ECOLOGICAL INDICATORS

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

(2011) Daniel McDonald et al.   ISME Journal

Microbial mediation of carbon-cycle feedbacks to climate warming

(2011) Jizhong Zhou et al.   Nature Climate Change

Metagenomic analysis reveals a marked divergence in the structure of belowground microbial communities at elevated CO2

(2010) Zhili He et al.   ECOLOGY LETTERS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Fungi mediate long term sequestration of carbon and nitrogen in soil through their priming effect

(2010) S. Fontaine et al.   SOIL BIOLOGY & BIOCHEMISTRY

Characterization of the Oral Fungal Microbiome (Mycobiome) in Healthy Individuals

(2010) Mahmoud A. Ghannoum et al.   PLoS Pathogens

Purification and characterization of two extracellular endochitinases from Massilia timonae

(2009) Sina Adrangi et al.   CARBOHYDRATE RESEARCH

Luteimonas terricola sp. nov., a psychrophilic bacterium isolated from soil

(2009) D.-C. Zhang et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Nature of the “occluded” low-density fraction in soil organic matter studies: A critical review

(2009) Rota Wagai et al.   SOIL SCIENCE AND PLANT NUTRITION

SOAP: short oligonucleotide alignment program

(2008) R. Li et al.   BIOINFORMATICS

Soil-carbon preservation through habitat constraints and biological limitations on decomposer activity

(2008) Klemens Ekschmitt et al.   JOURNAL OF PLANT NUTRITION AND SOIL SCIENCE

Metagenomic signatures of the Peru Margin subseafloor biosphere show a genetically distinct environment

(2008) J. F. Biddle et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Molecular C dynamics downstream: The biochemical decomposition sequence and its impact on soil organic matter structure and function

(2008) A. Stuart Grandy et al.   SCIENCE OF THE TOTAL ENVIRONMENT