Network analysis and subsequent culturing reveal keystone taxa involved in microbial litter decomposition dynamics

Scaling‐up biodiversity‐ecosystem functioning research

(2020) Andrew Gonzalez et al.   ECOLOGY LETTERS

Ligninolytic enzyme involved in removal of high molecular weight polycyclic aromatic hydrocarbons by Fusarium strain ZH-H2

(2020) Xiaoxue Zhang et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Agricultural intensification reduces microbial network complexity and the abundance of keystone taxa in roots

(2019) Samiran Banerjee et al.   ISME Journal

Deciphering the Fenton-reaction-aid lignocellulose degradation pattern by Phanerochaete chrysosporium with ferroferric oxide nanomaterials: Enzyme secretion, straw humification and structural alteration

(2019) Danlian Huang et al.   BIORESOURCE TECHNOLOGY

Change in straw decomposition rate and soil microbial community composition after straw addition in different long-term fertilization soils

(2019) Shicheng Zhao et al.   APPLIED SOIL ECOLOGY

Crop-based composting of lignocellulosic digestates: Focus on bacterial and fungal diversity

(2019) Çağrı Akyol et al.   BIORESOURCE TECHNOLOGY

Litter decomposition in fenced and grazed grasslands: A test of the home-field advantage hypothesis

(2019) Xiaobo Yuan et al.   GEODERMA

Fungal-bacterial diversity and microbiome complexity predict ecosystem functioning

(2019) Cameron Wagg et al.   Nature Communications

Diverse culturable bacterial communities with cellulolytic potential revealed from pristine habitat in Indian trans-Himalaya

(2018) Vikas Thakur et al.   CANADIAN JOURNAL OF MICROBIOLOGY

Ecological drivers of soil microbial diversity and soil biological networks in the Southern Hemisphere

(2018) Manuel Delgado-Baquerizo et al.   ECOLOGY

Species co-occurrence networks: Can they reveal trophic and non-trophic interactions in ecological communities?

(2018) Mara A. Freilich et al.   ECOLOGY

Keystone taxa as drivers of microbiome structure and functioning

(2018) Samiran Banerjee et al.   NATURE REVIEWS MICROBIOLOGY

High carbon use efficiency and low priming effect promote soil C stabilization under reduced tillage

(2018) Marie Sauvadet et al.   SOIL BIOLOGY & BIOCHEMISTRY

Soil bacterial networks are less stable under drought than fungal networks

(2018) Franciska T. de Vries et al.   Nature Communications

Rice straw decomposition affects diversity and dynamics of soil fungal community, but not bacteria

(2017) Peng Li et al.   JOURNAL OF SOILS AND SEDIMENTS

Soil networks become more connected and take up more carbon as nature restoration progresses

(2017) Elly Morriën et al.   Nature Communications

A bifunctional cellulase-xylanase of a new Chryseobacterium strain isolated from the dung of a straw-fed cattle

(2017) Hao Tan et al.   Microbial Biotechnology

Synergistic effect of cellulase and xylanase during hydrolysis of natural lignocellulosic substrates

(2016) Hui-Ting Song et al.   BIORESOURCE TECHNOLOGY

Fungal biomass and extracellular enzyme activities in coarse woody debris of 13 tree species in the early phase of decomposition

(2016) Lisa Noll et al.   FOREST ECOLOGY AND MANAGEMENT

Aboveground litter quality is a better predictor than belowground microbial communities when estimating carbon mineralization along a land-use gradient

(2016) Nicolas Fanin et al.   SOIL BIOLOGY & BIOCHEMISTRY

Network analysis reveals functional redundancy and keystone taxa amongst bacterial and fungal communities during organic matter decomposition in an arable soil

(2016) Samiran Banerjee et al.   SOIL BIOLOGY & BIOCHEMISTRY

Microbial Hub Taxa Link Host and Abiotic Factors to Plant Microbiome Variation

(2016) Matthew T. Agler et al.   PLOS BIOLOGY

Cellulose and hemicellulose decomposition by forest soil bacteria proceeds by the action of structurally variable enzymatic systems

(2016) Rubén López-Mondéjar et al.   Scientific Reports

Production and characterization of cellulolytic enzyme from Penicillium oxalicum GZ-2 and its application in lignocellulose saccharification

(2015) Hanpeng Liao et al.   BIOMASS & BIOENERGY

Fungal Cellulases

(2015) Christina M. Payne et al.   CHEMICAL REVIEWS

Microbial community dynamics during the early stages of plant polymer breakdown in paddy soil

(2015) Carl-Eric Wegner et al.   ENVIRONMENTAL MICROBIOLOGY

Shifts in microbial diversity through land use intensity as drivers of carbon mineralization in soil

(2015) Vincent Tardy et al.   SOIL BIOLOGY & BIOCHEMISTRY

Soil chemical properties affect the reaction of forest soil bacteria to drought and rewetting stress

(2014) Marcin Chodak et al.   ANNALS OF MICROBIOLOGY

Exploiting composting biodiversity: Study of the persistent and biotechnologically relevant microorganisms from lignocellulose-based composting

(2014) Macarena Jurado et al.   BIORESOURCE TECHNOLOGY

Insights into high-efficiency lignocellulolytic enzyme production by Penicillium oxalicum GZ-2 induced by a complex substrate

(2014) Hanpeng Liao et al.   Biotechnology for Biofuels

The Gut Commensal Bacteroides thetaiotaomicron Exacerbates Enteric Infection through Modification of the Metabolic Landscape

(2014) Meredith M. Curtis et al.   Cell Host & Microbe

Genomics of cellulolytic bacteria

(2014) Daniela E Koeck et al.   CURRENT OPINION IN BIOTECHNOLOGY

Study on biodegradation process of lignin by FTIR and DSC

(2014) Yang Liu et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Assessing the Relative Effects of Geographic Location and Soil Type on Microbial Communities Associated with Straw Decomposition

(2013) Bo Sun et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Litter quality versus soil microbial community controls over decomposition: a quantitative analysis

(2013) Cory C. Cleveland et al.   OECOLOGIA

Global soil carbon projections are improved by modelling microbial processes

(2013) William R. Wieder et al.   Nature Climate Change

Production and characterization of acidophilic xylanolytic enzymes from Penicillium oxalicum GZ-2

(2012) Hanpeng Liao et al.   BIORESOURCE TECHNOLOGY

The origin of litter chemical complexity during decomposition

(2012) Kyle Wickings et al.   ECOLOGY LETTERS

Fungal Bioconversion of Lignocellulosic Residues; Opportunities & Perspectives

(2012) Mehdi Dashtban et al.   International Journal of Biological Sciences

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Fungal community on decomposing leaf litter undergoes rapid successional changes

(2012) Jana Voříšková et al.   ISME Journal

Microbial control over carbon cycling in soil

(2012) Joshua P. Schimel et al.   Frontiers in Microbiology

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Small-scale distribution of extracellular enzymes, fungal, and bacterial biomass in Quercus petraea forest topsoil

(2010) Petr Baldrian et al.   BIOLOGY AND FERTILITY OF SOILS

ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases

(2010) Eva Bellemain et al.   BMC MICROBIOLOGY

Transformation of Quercus petraea litter: successive changes in litter chemistry are reflected in differential enzyme activity and changes in the microbial community composition

(2010) Jaroslav Šnajdr et al.   FEMS MICROBIOLOGY ECOLOGY

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The microbial community composition changes rapidly in the early stages of decomposition of wheat residue

(2010) Petra Marschner et al.   SOIL BIOLOGY & BIOCHEMISTRY

Design of 16S rRNA gene primers for 454 pyrosequencing of the human foregut microbiome

(2010) Carlos W Nossa   WORLD JOURNAL OF GASTROENTEROLOGY

Testing the functional significance of microbial community composition

(2009) Michael S. Strickland et al.   ECOLOGY

Microbial community structure and its functional implications

(2009) Jed A. Fuhrman   NATURE

Effects of different land use on soil chemical properties, decomposition rate and earthworm communities in tropical Mexico

(2009) Violette Geissen et al.   PEDOBIOLOGIA

Microbial communities and their relevance for ecosystem models: Decomposition as a case study

(2009) Krista L. McGuire et al.   SOIL BIOLOGY & BIOCHEMISTRY

fdrtool: a versatile R package for estimating local and tail area-based false discovery rates

(2008) K. Strimmer   BIOINFORMATICS

Rapid phylogenetic dissection of prokaryotic community structure in tidal flat using pyrosequencing

(2008) Bong-Soo Kim et al.   JOURNAL OF MICROBIOLOGY

Impact of wheat straw decomposition on successional patterns of soil microbial community structure

(2008) Fabiola Bastian et al.   SOIL BIOLOGY & BIOCHEMISTRY

Comparison of Penicillium echinulatum and Trichoderma reesei cellulases in relation to their activity against various cellulosic substrates

(2007) Leonardo Faria Martins et al.   BIORESOURCE TECHNOLOGY

Activity and spatial distribution of lignocellulose-degrading enzymes during forest soil colonization by saprotrophic basidiomycetes

(2007) Jaroslav Šnajdr et al.   ENZYME AND MICROBIAL TECHNOLOGY