Environment and Co-occurring Native Mussel Species, but Not Host Genetics, Impact the Microbiome of a Freshwater Invasive Species (Corbicula fluminea)

The effects of food quantity, light, and temperature on clearance rates in freshwater bivalves (Cyrenidae and Unionidae)

(2021) Simon Pouil et al.   HYDROBIOLOGIA

Aggregated filter‐feeders govern the flux and stoichiometry of locally available energy and nutrients in rivers

(2021) Garrett W. Hopper et al.   FUNCTIONAL ECOLOGY

Gut Microbiomes of Freshwater Mussels (Unionidae) Are Taxonomically and Phylogenetically Variable across Years but Remain Functionally Stable

(2021) Mark McCauley et al.   Microorganisms

Dissecting the chromosome-level genome of the Asian Clam (Corbicula fluminea)

(2021) Tongqing Zhang et al.   Scientific Reports

Mussel Mass Mortality and the Microbiome: Evidence for Shifts in the Bacterial Microbiome of a Declining Freshwater Bivalve

(2021) Jordan C. Richard et al.   Microorganisms

Scientists’ warning to humanity on the freshwater biodiversity crisis

(2020) James S. Albert et al.   AMBIO

Partitioning of Bee Diversity at a Small Spatial Scale in an Urban Arboretum

(2020) Jeffrey D. Lozier et al.   SOUTHEASTERN NATURALIST

(My Microbiome) Would Walk 10,000 miles: Maintenance and Turnover of Microbial Communities in Introduced Dung Beetles

(2020) Erik S. Parker et al.   MICROBIAL ECOLOGY

PICRUSt2 for prediction of metagenome functions

(2020) Gavin M. Douglas et al.   NATURE BIOTECHNOLOGY

The bacterioplankton community composition and a host genotype dependent occurrence of taxa shape the Daphnia magna gut bacterial community

(2020) Martijn Callens et al.   FEMS MICROBIOLOGY ECOLOGY

Clearance rates of freshwater bivalves Corbicula fluminea and Utterbackia imbecillis in the presence and absence of light

(2020) Amber Hills et al.   AQUATIC ECOLOGY

Digestive gland microbiome of Pleurobema cordatum: mesocosms induce dysbiosis

(2020) Alison K Aceves et al.   JOURNAL OF MOLLUSCAN STUDIES

Comparative analysis of gut microbiota diversity in endangered, economical, and common freshwater mussels using 16S rRNA gene sequencing

(2020) Xiongjun Liu et al.   Ecology and Evolution

Comparative Microbiome and Metabolome Analyses of the Marine Tunicate Ciona intestinalis from Native and Invaded Habitats

(2020) Caroline Utermann et al.   Microorganisms

Feeding rates and prey selection of the invasive Asian clam, Corbicula fluminea, on microplankton in the Columbia River, USA

(2019) Benjamin A. Bolam et al.   HYDROBIOLOGIA

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

FEAST: fast expectation-maximization for microbial source tracking

(2019) Liat Shenhav et al.   NATURE METHODS

Environmental conditions and neutral processes shape the skin microbiome of European catfish ( Silurus glanis ) populations of Southwestern France

(2019) Marlène Chiarello et al.   Environmental Microbiology Reports

Stacks 2: analytical methods for paired‐end sequencing improve RADseq‐based population genomics

(2019) Nicolas C. Rochette et al.   MOLECULAR ECOLOGY

Phylogenomic analyses confirm a novel invasive North American Corbicula (Bivalvia: Cyrenidae) lineage

(2019) Amanda E. Haponski et al.   PeerJ

The gut microbiome of freshwater Unionidae mussels is determined by host species and is selectively retained from filtered seston

(2019) Eric A. Weingarten et al.   PLoS One

Conservation of freshwater bivalves at the global scale: diversity, threats and research needs

(2018) Manuel Lopes-Lima et al.   HYDROBIOLOGIA

Phylogenetic Placement of Exact Amplicon Sequences Improves Associations with Clinical Information

(2018) Stefan Janssen et al.   mSystems

Bivalve Impacts in Freshwater and Marine Ecosystems

(2018) Caryn C. Vaughn et al.   Annual Review of Ecology Evolution and Systematics

The Alliance for Freshwater Life : A global call to unite efforts for freshwater biodiversity science and conservation

(2018) William Darwall et al.   AQUATIC CONSERVATION-MARINE AND FRESHWATER ECOSYSTEMS

First evidence of asymmetric competition between the non-native clam Corbicula fluminea and the native freshwater mussel Unio delphinus during a summer heat wave

(2018) Noé Ferreira-Rodríguez et al.   AQUATIC CONSERVATION-MARINE AND FRESHWATER ECOSYSTEMS

No saturation in the accumulation of alien species worldwide

(2017) Hanno Seebens et al.   Nature Communications

Alien species as a driver of recent extinctions

(2016) Céline Bellard et al.   Biology Letters

Negative effects of Corbicula fluminea over native freshwater mussels

(2016) Noé Ferreira-Rodríguez et al.   HYDROBIOLOGIA

Plant mutualisms with rhizosphere microbiota in introduced versus native ranges

(2016) Natasha Shelby et al.   JOURNAL OF ECOLOGY

From pedal to filter feeding: ctenidial organogenesis and implications for feeding in the postlarval freshwater pearl musselMargaritifera margaritifera(Linnaeus, 1758)

(2016) Eivind Schartum et al.   JOURNAL OF MOLLUSCAN STUDIES

vcfr: a package to manipulate and visualize variant call format data in R

(2016) Brian J. Knaus et al.   Molecular Ecology Resources

Harnessing the power of RADseq for ecological and evolutionary genomics

(2016) Kimberly R. Andrews et al.   NATURE REVIEWS GENETICS

The Microbiome of Animals: Implications for Conservation Biology

(2016) Simon Bahrndorff et al.   International Journal of Genomics

RAD Capture (Rapture): Flexible and Efficient Sequence-Based Genotyping

(2015) O. A. Ali et al.   GENETICS

entropart: AnRPackage to Measure and Partition Diversity

(2015) Eric Marcon et al.   Journal of Statistical Software

Advancing the science of microbial symbiosis to support invasive species management: a case study on Phragmites in the Great Lakes

(2015) Kurt P. Kowalski et al.   Frontiers in Microbiology

Novel R tools for analysis of genome-wide population genetic data with emphasis on clonality

(2015) Zhian N. Kamvar et al.   Frontiers in Genetics

Biology and conservation of freshwater bivalves: past, present and future perspectives

(2014) Manuel Lopes-Lima et al.   HYDROBIOLOGIA

The rhizosphere microbiota of plant invaders: an overview of recent advances in the microbiomics of invasive plants

(2014) Vanessa C. Coats et al.   Frontiers in Microbiology

Poppr: an R package for genetic analysis of populations with clonal, partially clonal, and/or sexual reproduction

(2014) Zhian N. Kamvar et al.   PeerJ

Co-invaders: The effects of alien parasites on native hosts

(2014) Alan J. Lymbery et al.   International Journal for Parasitology-Parasites and Wildlife

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Disturbance induced decoupling between host genetics and composition of the associated microbiome

(2013) Karl Wegner et al.   BMC MICROBIOLOGY

Selective feeding by Anodonta cygnea (Linnaeus, 1771): The effects of seasonal changes and nutritional demands

(2013) Manuel Lopes-Lima et al.   LIMNOLOGICA

Stacks: an analysis tool set for population genomics

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

StAMPP: an R package for calculation of genetic differentiation and structure of mixed-ploidy level populations

(2013) Luke W. Pembleton et al.   Molecular Ecology Resources

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

(2011) Daniel McDonald et al.   ISME Journal

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

Picante: R tools for integrating phylogenies and ecology

(2010) S. W. Kembel et al.   BIOINFORMATICS

Stable isotopic signatures, tissue stoichiometry, and nutrient cycling (C and N) of native and invasive freshwater bivalves

(2010) Carla L. Atkinson et al.   JOURNAL OF THE NORTH AMERICAN BENTHOLOGICAL SOCIETY

Ecology of the invasive Asian clam Corbicula fluminea (Müller, 1774) in aquatic ecosystems: an overview

(2009) R. Sousa et al.   ANNALES DE LIMNOLOGIE-INTERNATIONAL JOURNAL OF LIMNOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Infectious Diseases of Freshwater Mussels and Other Freshwater Bivalve Mollusks

(2009) JOHN M. GRIZZLE et al.   REVIEWS IN FISHERIES SCIENCE

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS