Mutations in degP and spoT Genes Mediate Response to Fermentation Stress in Thermally Adapted Strains of Acetic Acid Bacterium Komagataeibacter medellinensis NBRC 3288

(p)ppGpp-mediated stress response induced by defects in outer membrane biogenesis and ATP production promotes survival in Escherichia coli

(2019) Mohammad Roghanian et al.   Scientific Reports

In Vitro Thermal and Ethanol Adaptations to Improve Vinegar Fermentation at High Temperature of Komagataeibacter oboediens MSKU 3

(2019) Pornchanok Taweecheep et al.   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

The effect of reactive oxygen species (ROS) and ROS-scavenging enzymes, superoxide dismutase and catalase, on the thermotolerant ability of Corynebacterium glutamicum

(2019) Nawarat Nantapong et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Capacity for survival in global warming: Adaptation of mesophiles to the temperature upper limit

(2019) Tomoyuki Kosaka et al.   PLoS One

An interbacterial toxin inhibits target cell growth by synthesizing (p)ppApp

(2019) Shehryar Ahmad et al.   NATURE

In vitro thermal adaptation of mesophilic Acetobacter pasteurianus NBRC 3283 generates thermotolerant strains with evolutionary trade-offs

(2019) Nami Matsumoto et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

Triggering the stringent response: signals responsible for activating (p)ppGpp synthesis in bacteria

(2018) Sophie E. Irving et al.   MICROBIOLOGY-SGM

A Single-Nucleotide Insertion in a Drug Transporter Gene Induces a Thermotolerance Phenotype in Gluconobacter frateurii by Increasing the NADPH/NADP + Ratio via Metabolic Change

(2018) Nami Matsumoto et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Quantitative proteomics analysis by iTRAQ revealed underlying changes in thermotolerance of Arthrospira platensis

(2017) Rong Chang et al.   Journal of Proteomics

HPLC-based quantification of bacterial housekeeping nucleotides and alarmone messengers ppGpp and pppGpp

(2017) Vallo Varik et al.   Scientific Reports

Genomic analyses of thermotolerant microorganisms used for high-temperature fermentations

(2015) Kazunobu Matsushita et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

(p)ppGpp modulates cell size and the initiation of DNA replication in Caulobacter crescentus in response to a block in lipid biosynthesis

(2015) Kristina V. Stott et al.   MICROBIOLOGY-SGM

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Different tradeoffs result from alternate genetic adaptations to a common environment

(2014) A. Rodriguez-Verdugo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Altered sterol composition renders yeast thermotolerant

(2014) L. Caspeta et al.   SCIENCE

Importance of codB for new codA-based markerless gene deletion in Gluconobacter strains

(2013) David Kostner et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Envelope Control of Outer Membrane Vesicle Production in Gram-Negative Bacteria

(2013) Carmen Schwechheimer et al.   BIOCHEMISTRY

TCC: an R package for comparing tag count data with robust normalization strategies

(2013) Jianqiang Sun et al.   BMC BIOINFORMATICS

Adaptive mutation of Acetobacter pasteurianus SKU1108 enhances acetic acid fermentation ability at high temperature

(2013) Minenosuke Matsutani et al.   JOURNAL OF BIOTECHNOLOGY

High-temperature sorbose fermentation with thermotolerant Gluconobacter frateurii CHM43 and its mutant strain adapted to higher temperature

(2012) Hiromi Hattori et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Global Analysis of the Genes Involved in the Thermotolerance Mechanism of ThermotolerantAcetobacter tropicalisSKU1100

(2011) Wichai SOEMPHOL et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

Complete Genome Sequence of NBRC 3288, a Unique Cellulose-Nonproducing Strain of Gluconacetobacter xylinus Isolated from Vinegar

(2011) H. Ogino et al.   JOURNAL OF BACTERIOLOGY

Molecular Strategy for Survival at a Critical High Temperature in Eschierichia coli

(2011) Masayuki Murata et al.   PLoS One

Stress response regulators identified through genome-wide transcriptome analysis of the (p)ppGpp-dependent response in Rhizobium etli

(2011) Maarten Vercruysse et al.   GENOME BIOLOGY

Acetic Acid Fermentation ofAcetobacter pasteurianus: Relationship between Acetic Acid Resistance and Pellicle Polysaccharide Formation

(2010) Watchara KANCHANARACH et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

Evolution ofEscherichia colifor Growth at High Temperatures

(2010) Birgit Rudolph et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Biophysical Characterization of Styryl Dye-Membrane Interactions

(2009) Yao Wu et al.   BIOPHYSICAL JOURNAL

Whole-genome analyses reveal genetic instability of Acetobacter pasteurianus

(2009) Yoshinao Azuma et al.   NUCLEIC ACIDS RESEARCH

The global, ppGpp-mediated stringent response to amino acid starvation in Escherichia coli

(2008) Matthew F. Traxler et al.   MOLECULAR MICROBIOLOGY