HLA-A*11:01-restricted CD8+ T cell immunity against influenza A and influenza B viruses in Indigenous and non-Indigenous people

CD8+ T cell landscape in Indigenous and non-Indigenous people restricted by influenza mortality-associated HLA-A*24:02 allomorph

(2021) Luca Hensen et al.   Nature Communications

The pockets guide to HLA class I molecules

(2021) Andrea T. Nguyen et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Human CD8+ T cell cross-reactivity across influenza A, B and C viruses

(2019) Marios Koutsakos et al.   NATURE IMMUNOLOGY

Mass spectrometry–based identification of MHC-bound peptides for immunopeptidomics

(2019) Anthony W. Purcell et al.   Nature Protocols

The epidemiological signature of influenza B virus and its B/Victoria and B/Yamagata lineages in the 21st century

(2019) Saverio Caini et al.   PLoS One

Modification of the cyclopropyl moiety of abacavir provides insight into the structure activity relationship between HLA‐B*57:01 binding and T‐cell activation

(2019) Paul J. Thomson et al.   ALLERGY

A large peptidome dataset improves HLA class I epitope prediction across most of the human population

(2019) Siranush Sarkizova et al.   NATURE BIOTECHNOLOGY

Clonally diverse CD38+HLA-DR+CD8+ T cells persist during fatal H7N9 disease

(2018) Zhongfang Wang et al.   Nature Communications

Innate and adaptive T cells in influenza disease

(2018) Simone Nüssing et al.   Frontiers of Medicine

Influenza

(2018) Florian Krammer et al.   Nature Reviews Disease Primers

The PRIDE database and related tools and resources in 2019: improving support for quantification data

(2018) Yasset Perez-Riverol et al.   NUCLEIC ACIDS RESEARCH

Knowns and unknowns of influenza B viruses

(2016) Marios Koutsakos et al.   Future Microbiology

Lack of Heterologous Cross-reactivity toward HLA-A*02:01 Restricted Viral Epitopes Is Underpinned by Distinct αβT Cell Receptor Signatures

(2016) Emma J. Grant et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Cross-immunity Against Avian Influenza A(H7N9) Virus in the Healthy Population Is Affected by Antigenicity-Dependent Substitutions

(2016) William J. Liu et al.   JOURNAL OF INFECTIOUS DISEASES

A Role of Influenza Virus Exposure History in Determining Pandemic Susceptibility and CD8+T Cell Responses

(2016) Sergio M. Quiñones-Parra et al.   JOURNAL OF VIROLOGY

Variable influenza vaccine effectiveness by subtype: a systematic review and meta-analysis of test-negative design studies

(2016) Edward A Belongia et al.   LANCET INFECTIOUS DISEASES

Natural T Cell–mediated Protection against Seasonal and Pandemic Influenza. Results of the Flu Watch Cohort Study

(2015) Andrew C. Hayward et al.   AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE

Gapped sequence alignment using artificial neural networks: application to the MHC class I system

(2015) Massimo Andreatta et al.   BIOINFORMATICS

Towards identification of immune and genetic correlates of severe influenza disease in Indigenous Australians

(2015) E Bridie Clemens et al.   IMMUNOLOGY AND CELL BIOLOGY

Recovery from severe H7N9 disease is associated with diverse response mechanisms dominated by CD8+ T cells

(2015) Zhongfang Wang et al.   Nature Communications

Influenza surveillance in the Pacific Island countries and territories during the 2009 pandemic: an observational study

(2013) Jacobus Leen Kool et al.   BMC INFECTIOUS DISEASES

Cellular immune correlates of protection against symptomatic pandemic influenza

(2013) Saranya Sridhar et al.   NATURE MEDICINE

Unipro UGENE: a unified bioinformatics toolkit

(2012) Konstantin Okonechnikov et al.   BIOINFORMATICS

Conditional ligands for Asian HLA variants facilitate the definition of CD8+T-cell responses in acute and chronic viral diseases

(2012) Cynthia X. L. Chang et al.   EUROPEAN JOURNAL OF IMMUNOLOGY

Myocardial Injury and Bacterial Pneumonia Contribute to the Pathogenesis of Fatal Influenza B Virus Infection

(2012) Christopher D. Paddock et al.   JOURNAL OF INFECTIOUS DISEASES

Cross-Allele Cytotoxic T Lymphocyte Responses against 2009 Pandemic H1N1 Influenza A Virus among HLA-A24 and HLA-A3 Supertype-Positive Individuals

(2012) J. Liu et al.   JOURNAL OF VIROLOGY

Seq2Logo: a method for construction and visualization of amino acid binding motifs and sequence profiles including sequence weighting, pseudo counts and two-sided representation of amino acid enrichment and depletion

(2012) Martin Christen Frølund Thomsen et al.   NUCLEIC ACIDS RESEARCH

Using iRT, a normalized retention time for more targeted measurement of peptides

(2012) Claudia Escher et al.   PROTEOMICS

The rationale for quadrivalent influenza vaccines

(2012) Christopher S. Ambrose et al.   Human Vaccines & Immunotherapeutics

Identification of a Novel Splice Variant Form of the Influenza A Virus M2 Ion Channel with an Antigenically Distinct Ectodomain

(2012) Helen M. Wise et al.   PLoS Pathogens

Integration, scaling, space-group assignment and post-refinement

(2010) Wolfgang Kabsch   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Identification of broad binding class I HLA supertype epitopes to provide universal coverage of influenza A virus

(2010) Jeff Alexander et al.   HUMAN IMMUNOLOGY

Protective Efficacy of Cross-Reactive CD8+ T Cells Recognising Mutant Viral Epitopes Depends on Peptide-MHC-I Structural Interactions and T Cell Activation Threshold

(2010) Sophie A. Valkenburg et al.   PLoS Pathogens

The Structural Dynamics and Energetics of an Immunodominant T Cell Receptor Are Programmed by Its Vβ Domain

(2008) Jeffrey Ishizuka et al.   IMMUNITY

Immunomic Analysis of the Repertoire of T-Cell Specificities for Influenza A Virus in Humans

(2008) E. Assarsson et al.   JOURNAL OF VIROLOGY