Mass spectrometry–based identification of MHC-bound peptides for immunopeptidomics
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Title
Mass spectrometry–based identification of MHC-bound peptides for immunopeptidomics
Authors
Keywords
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Journal
Nature Protocols
Volume 14, Issue 6, Pages 1687-1707
Publisher
Springer Science and Business Media LLC
Online
2019-05-16
DOI
10.1038/s41596-019-0133-y
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Note: Only part of the references are listed.- In Immunopeptidomics We Need a Sniper Instead of a Shotgun
- (2018) Pouya Faridi et al. PROTEOMICS
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- (2017) Michael S. Khodadoust et al. NATURE
- The SysteMHC Atlas project
- (2017) Wenguang Shao et al. NUCLEIC ACIDS RESEARCH
- Deciphering HLA-I motifs across HLA peptidomes improves neo-antigen predictions and identifies allostery regulating HLA specificity
- (2017) Michal Bassani-Sternberg et al. PLoS Computational Biology
- The Potential and Challenges of Exploiting the Vast But Dynamic Neoepitope Landscape for Immunotherapy
- (2017) Els M. E. Verdegaal et al. Frontiers in Immunology
- Towards the knowledge-based design of universal influenza epitope ensemble vaccines
- (2016) Qamar M. Sheikh et al. BIOINFORMATICS
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- (2016) James W. Wynne et al. JOURNAL OF IMMUNOLOGY
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- (2016) Thomas Trolle et al. JOURNAL OF IMMUNOLOGY
- Human Leukocyte Antigen (HLA) B27 Allotype-Specific Binding and Candidate Arthritogenic Peptides Revealed through Heuristic Clustering of Data-independent Acquisition Mass Spectrometry (DIA-MS) Data
- (2016) Ralf B. Schittenhelm et al. MOLECULAR & CELLULAR PROTEOMICS
- Sampling From the Proteome to the Human Leukocyte Antigen-DR (HLA-DR) Ligandome ProceedsViaHigh Specificity
- (2016) Geert P. M. Mommen et al. MOLECULAR & CELLULAR PROTEOMICS
- Six alternative proteases for mass spectrometry–based proteomics beyond trypsin
- (2016) Piero Giansanti et al. Nature Protocols
- The MaxQuant computational platform for mass spectrometry-based shotgun proteomics
- (2016) Stefka Tyanova et al. Nature Protocols
- A large fraction of HLA class I ligands are proteasome-generated spliced peptides
- (2016) Juliane Liepe et al. SCIENCE
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- (2016) Michal Bassani-Sternberg et al. Nature Communications
- Gapped sequence alignment using artificial neural networks: application to the MHC class I system
- (2015) Massimo Andreatta et al. BIOINFORMATICS
- Defining the HLA class I-associated viral antigen repertoire from HIV-1-infected human cells
- (2015) Nicola Ternette et al. EUROPEAN JOURNAL OF IMMUNOLOGY
- Towards identification of immune and genetic correlates of severe influenza disease in Indigenous Australians
- (2015) E Bridie Clemens et al. IMMUNOLOGY AND CELL BIOLOGY
- Early Kinetics of the HLA Class I-Associated Peptidome of MVA.HIVconsv-Infected Cells
- (2015) Nicola Ternette et al. JOURNAL OF VIROLOGY
- Mass Spectrometry of Human Leukocyte Antigen Class I Peptidomes Reveals Strong Effects of Protein Abundance and Turnover on Antigen Presentation
- (2015) Michal Bassani-Sternberg et al. MOLECULAR & CELLULAR PROTEOMICS
- Complementary IMAC enrichment methods for HLA-associated phosphopeptide identification by mass spectrometry
- (2015) Jennifer G Abelin et al. Nature Protocols
- A comprehensive analysis of peptides presented by HLA-A1
- (2015) K. Giam et al. TISSUE ANTIGENS
- An open-source computational and data resource to analyze digital maps of immunopeptidomes
- (2015) Etienne Caron et al. eLife
- Revisiting the Arthritogenic Peptide Theory: Quantitative Not Qualitative Changes in the Peptide Repertoire of HLA-B27 Allotypes
- (2015) Ralf B. Schittenhelm et al. Arthritis & Rheumatology
- Peptide–MHC multimer-based monitoring of CD8 T-cells in HIV-1 infection and AIDS vaccine development
- (2014) Alena Y Reguzova et al. Expert Review of Vaccines
- The Cellular Redox Environment Alters Antigen Presentation
- (2014) Jonathan A. Trujillo et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Direct Interrogation of Viral Peptides Presented by the Class I HLA of HIV-Infected T Cells
- (2014) J. C. Yaciuk et al. JOURNAL OF VIROLOGY
- Expanding Proteome Coverage with Orthogonal-specificity α-Lytic Proteases
- (2014) Jesse G. Meyer et al. MOLECULAR & CELLULAR PROTEOMICS
- Expanding the detectable HLA peptide repertoire using electron-transfer/higher-energy collision dissociation (EThcD)
- (2014) G. P. M. Mommen et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A comprehensive analysis of constitutive naturally processed and presentedHLA-C*04:01(Cw4) - specific peptides
- (2014) R. B. Schittenhelm et al. TISSUE ANTIGENS
- Flow-cytometric analysis of rare antigen-specific T cells
- (2013) Petra Bacher et al. CYTOMETRY PART A
- Discovering naturally processed antigenic determinants that confer protective T cell immunity
- (2013) Pavlo Gilchuk et al. JOURNAL OF CLINICAL INVESTIGATION
- A molecular basis for the association of the HLA-DRB1 locus, citrullination, and rheumatoid arthritis
- (2013) Stephen W. Scally et al. JOURNAL OF EXPERIMENTAL MEDICINE
- Abacavir induces loading of novel self-peptides into HLA-B*57
- (2012) Michael A. Norcross et al. AIDS
- Simultaneous alignment and clustering of peptide data using a Gibbs sampling approach
- (2012) Massimo Andreatta et al. BIOINFORMATICS
- MHC Class II Tetramers
- (2012) G. T. Nepom JOURNAL OF IMMUNOLOGY
- Secreted HLA recapitulates the immunopeptidome and allows in-depth coverage of HLA A*02:01 ligands
- (2012) Katherine E. Scull et al. MOLECULAR IMMUNOLOGY
- Immune self-reactivity triggered by drug-modified HLA-peptide repertoire
- (2012) Patricia T. Illing et al. NATURE
- Seq2Logo: a method for construction and visualization of amino acid binding motifs and sequence profiles including sequence weighting, pseudo counts and two-sided representation of amino acid enrichment and depletion
- (2012) Martin Christen Frølund Thomsen et al. NUCLEIC ACIDS RESEARCH
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- (2011) F. Crawford et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Soluble plasma HLA peptidome as a potential source for cancer biomarkers
- (2010) M. Bassani-Sternberg et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- HLA-C cell surface expression and control of HIV/AIDS correlate with a variant upstream of HLA-C
- (2009) Rasmi Thomas et al. NATURE GENETICS
- HLA class I molecules consistently present internal influenza epitopes
- (2009) A. Wahl et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Immunomic Analysis of the Repertoire of T-Cell Specificities for Influenza A Virus in Humans
- (2008) E. Assarsson et al. JOURNAL OF VIROLOGY
- Phosphorylation-dependent interaction between antigenic peptides and MHC class I: a molecular basis for the presentation of transformed self
- (2008) Fiyaz Mohammed et al. NATURE IMMUNOLOGY
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