Cell type-specific mechanisms of information transfer in data-driven biophysical models of hippocampal CA3 principal neurons

A taxonomy of transcriptomic cell types across the isocortex and hippocampal formation

(2021) Zizhen Yao et al.   CELL

Rapid synaptic plasticity contributes to a learned conjunctive code of position and choice-related information in the hippocampus

(2021) Xinyu Zhao et al.   NEURON

Membrane potential dynamics underlying context-dependent sensory responses in the hippocampus

(2020) Xinyu Zhao et al.   NATURE NEUROSCIENCE

PANTHER version 16: a revised family classification, tree-based classification tool, enhancer regions and extensive API

(2020) Huaiyu Mi et al.   NUCLEIC ACIDS RESEARCH

Heterogeneity within classical cell types is the rule: lessons from hippocampal pyramidal neurons

(2019) Mark S. Cembrowski et al.   NATURE REVIEWS NEUROSCIENCE

Diverse synaptic and dendritic mechanisms of complex spike burst generation in hippocampal CA3 pyramidal cells

(2019) Snezana Raus Balind et al.   Nature Communications

Experimentally-constrained biophysical models of tonic and burst firing modes in thalamocortical neurons

(2019) Elisabetta Iavarone et al.   PLoS Computational Biology

Correlation transfer by layer 5 cortical neurons under recreated synaptic inputs in vitro

(2019) Daniele Linaro et al.   JOURNAL OF NEUROSCIENCE

ShuTu: Open-Source Software for Efficient and Accurate Reconstruction of Dendritic Morphology

(2019) Dezhe Z. Jin et al.   Frontiers in Neuroinformatics

A novel pyramidal cell type promotes sharp-wave synchronization in the hippocampus

(2018) David L. Hunt et al.   NATURE NEUROSCIENCE

Neural Coding With Bursts—Current State and Future Perspectives

(2018) Fleur Zeldenrust et al.   Frontiers in Computational Neuroscience

Systematic generation of biophysically detailed models for diverse cortical neuron types

(2018) Nathan W. Gouwens et al.   Nature Communications

The physiological variability of channel density in hippocampal CA1 pyramidal cells and interneurons explored using a unified data-driven modeling workflow

(2018) Rosanna Migliore et al.   PLoS Computational Biology

Dimensionality reduction for visualizing single-cell data using UMAP

(2018) Etienne Becht et al.   NATURE BIOTECHNOLOGY

Calculating the Mutual Information between Two Spike Trains

(2018) Conor Houghton   NEURAL COMPUTATION

Behavioral time scale synaptic plasticity underlies CA1 place fields

(2017) Katie C. Bittner et al.   SCIENCE

Interneuronal mechanisms of hippocampal theta oscillations in a full-scale model of the rodent CA1 circuit

(2016) Marianne J Bezaire et al.   eLife

BluePyOpt: Leveraging Open Source Software and Cloud Infrastructure to Optimise Model Parameters in Neuroscience

(2016) Werner Van Geit et al.   Frontiers in Neuroinformatics

Reconstruction and Simulation of Neocortical Microcircuitry

(2015) Henry Markram et al.   CELL

Hippocampal sharp wave-ripple: A cognitive biomarker for episodic memory and planning

(2015) György Buzsáki   HIPPOCAMPUS

Conjunctive input processing drives feature selectivity in hippocampal CA1 neurons

(2015) Katie C Bittner et al.   NATURE NEUROSCIENCE

Electrical behaviour of dendritic spines as revealed by voltage imaging

(2015) Marko A. Popovic et al.   Nature Communications

Calculating mutual information for spike trains and other data with distances but no coordinates

(2015) C. Houghton   Royal Society Open Science

Spine neck plasticity regulates compartmentalization of synapses

(2014) Jan Tønnesen et al.   NATURE NEUROSCIENCE

Activity-dependent dendritic spine neck changes are correlated with synaptic strength

(2014) R. Araya et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Recurrent synapses and circuits in the CA3 region of the hippocampus: an associative network

(2014) Caroline Le Duigou et al.   Frontiers in Cellular Neuroscience

High Bandwidth Synaptic Communication and Frequency Tracking in Human Neocortex

(2014) Guilherme Testa-Silva et al.   PLOS BIOLOGY

Electrical Compartmentalization in Dendritic Spines

(2013) Rafael Yuste   Annual Review of Neuroscience

Bidirectional NMDA receptor plasticity controls CA3 output and heterosynaptic metaplasticity

(2013) David L Hunt et al.   NATURE NEUROSCIENCE

Variable Dendritic Integration in Hippocampal CA3 Pyramidal Neurons

(2013) Judit K. Makara et al.   NEURON

Synaptic amplification by dendritic spines enhances input cooperativity

(2012) Mark T. Harnett et al.   NATURE

Models of Neocortical Layer 5b Pyramidal Cells Capturing a Wide Range of Dendritic and Perisomatic Active Properties

(2011) Etay Hay et al.   PLoS Computational Biology

Dissecting the Phase Response of a Model Bursting Neuron

(2010) William Erik Sherwood et al.   SIAM JOURNAL ON APPLIED DYNAMICAL SYSTEMS

Burst-Timing-Dependent Plasticity of NMDA Receptor-Mediated Transmission in Midbrain Dopamine Neurons

(2009) Mark T. Harnett et al.   NEURON

Pathway Interactions and Synaptic Plasticity in the Dendritic Tuft Regions of CA1 Pyramidal Neurons

(2009) Hiroto Takahashi et al.   NEURON

NEURON and Python

(2009) Michael Hines   Frontiers in Neuroinformatics

Evaluating automated parameter constraining procedures of neuron models by experimental and surrogate data

(2008) Shaul Druckmann et al.   BIOLOGICAL CYBERNETICS

Distinct classes of pyramidal cells exhibit mutually exclusive firing patterns in hippocampal area CA3b

(2008) Peter Hemond et al.   HIPPOCAMPUS

Probability distributions of the logarithm of inter-spike intervals yield accurate entropy estimates from small datasets

(2008) Alan D. Dorval   JOURNAL OF NEUROSCIENCE METHODS

Neuronal Diversity and Temporal Dynamics: The Unity of Hippocampal Circuit Operations

(2008) T. Klausberger et al.   SCIENCE