A reference-grade genome identifies salt-tolerance genes from the salt-secreting mangrove species Avicennia marina

Convergent adaptation of the genomes of woody plants at the land-sea interface

(2020) Ziwen He et al.   National Science Review

BcpLH organizes a specific subset of microRNAs to form a leafy head in Chinese cabbage (Brassica rapa ssp. pekinensis)

(2020) Wenqing Ren et al.   Horticulture Research

Ectopic expression of AmNAC1 from Avicennia marina (Forsk.) Vierh. confers multiple abiotic stress tolerance in yeast and tobacco

(2020) Ashok Kumar Murugesan et al.   PLANT CELL TISSUE AND ORGAN CULTURE

Regulation of a cytochrome P450 gene CYP94B1 by WRKY33 transcription factor controls apoplastic barrier formation in roots to confer salt tolerance

(2020) Pannaga Krishnamurthy et al.   PLANT PHYSIOLOGY

A WD40-Repeat Protein From the Recretohalophyte Limonium bicolor Enhances Trichome Formation and Salt Tolerance in Arabidopsis

(2019) Fang Yuan et al.   Frontiers in Plant Science

An actin-depolymerizing factor from the halophyte smooth cordgrass, Spartina alterniflora (SaADF2 ), is superior to its rice homolog (OsADF2 ) in conferring drought and salt tolerance when constitutively overexpressed in rice

(2018) Sonali Sengupta et al.   PLANT BIOTECHNOLOGY JOURNAL

Co-overexpression of AVP1 and PP2A-C5 in Arabidopsis makes plants tolerant to multiple abiotic stresses

(2018) Li Sun et al.   PLANT SCIENCE

Accurate Detection of Chimeric Contigs via Bionano Optical Maps

(2018) Weihua Pan et al.   BIOINFORMATICS

Double-slit photoelectron interference in strong-field ionization of the neon dimer

(2018) Maksim Kunitski et al.   Nature Communications

Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation

(2017) Sergey Koren et al.   GENOME RESEARCH

Convergent adaptive evolution in marginal environments: unloading transposable elements as a common strategy among mangrove genomes

(2017) Haomin Lyu et al.   NEW PHYTOLOGIST

The origin, diversification and adaptation of a major mangrove clade (Rhizophoreae) revealed by whole genome sequencing

(2017) Shaohua Xu et al.   National Science Review

Suppression subtractive hybridization library construction and identification of epidermal bladder cell related genes in the common ice plant, Mesembryanthemum crystallinum L.

(2016) Siranet Roeurn et al.   PLANT PRODUCTION SCIENCE

Novel water filtration of saline water in the outermost layer of mangrove roots

(2016) Kiwoong Kim et al.   Scientific Reports

Growth responses of the mangrove Avicennia marina to salinity: development and function of shoot hydraulic systems require saline conditions

(2015) Hoa T. Nguyen et al.   ANNALS OF BOTANY

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Heterologous expression of the halophyte Zoysia matrella H+-pyrophosphatase gene improved salt tolerance in Arabidopsis thaliana

(2015) Yu Chen et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Next maSigPro: updating maSigPro bioconductor package for RNA-seq time series

(2014) M. J. Nueda et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Economics of salt-induced land degradation and restoration

(2014) M. Qadir et al.   NATURAL RESOURCES FORUM

Role of root hydrophobic barriers in salt exclusion of a mangrove plantAvicennia officinalis

(2014) PANNAGA KRISHNAMURTHY et al.   PLANT CELL AND ENVIRONMENT

World population stabilization unlikely this century

(2014) P. Gerland et al.   SCIENCE

Differences in proton pumping and Na/H exchange at the leaf cell tonoplast between a halophyte and a glycophyte

(2014) Diana Katschnig et al.   AoB Plants

The MaSuRCA genome assembler

(2013) Aleksey V. Zimin et al.   BIOINFORMATICS

Populus euphratica XTH overexpression enhances salinity tolerance by the development of leaf succulence in transgenic tobacco plants

(2013) Yansha Han et al.   JOURNAL OF EXPERIMENTAL BOTANY

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Genome-wide classification and expression analysis of MYB transcription factor families in rice and Arabidopsis

(2012) Amit Katiyar et al.   BMC GENOMICS

A MYB transcription factor from the grey mangrove is induced by stress andconfers NaCl tolerance in tobacco

(2012) G. Ganesan et al.   JOURNAL OF EXPERIMENTAL BOTANY

Salinity mediated biochemical changes towards differential adaptability of three mangroves from Indian Sundarbans

(2012) Nirjhar Dasgupta et al.   JOURNAL OF PLANT BIOCHEMISTRY AND BIOTECHNOLOGY

MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity

(2012) Y. Wang et al.   NUCLEIC ACIDS RESEARCH

Insights into salt tolerance from the genome ofThellungiella salsuginea

(2012) Hua-Jun Wu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A fast, lock-free approach for efficient parallel counting of occurrences of k-mers

(2011) Guillaume Marçais et al.   BIOINFORMATICS

Expression of a rice DREB1 gene, OsDREB1D, enhances cold and high-salt tolerance in transgenic Arabidopsis

(2011) Yang Zhang et al.   BMB Reports

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

A salt-inducible chloroplastic monodehydroascorbate reductase from halophyte Avicennia marina confers salt stress tolerance on transgenic plants

(2010) Kumaresan Kavitha et al.   BIOCHIMIE

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Shoot Na+ Exclusion and Increased Salinity Tolerance Engineered by Cell Type-Specific Alteration of Na+ Transport in Arabidopsis

(2009) I. S. Moller et al.   PLANT CELL

Betaine aldehyde dehydrogenase in plants

(2008) T. L. Fitzgerald et al.   PLANT BIOLOGY

Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

(2008) Brian J Haas et al.   GENOME BIOLOGY