A 3D transcriptomics atlas of the mouse nose sheds light on the anatomical logic of smell

Odor coding in the mammalian olfactory epithelium

(2021) Smija M. Kurian et al.   CELL AND TISSUE RESEARCH

Deconstructing the mouse olfactory percept through an ethological atlas

(2021) Diogo Manoel et al.   CURRENT BIOLOGY

AutoGeneS: Automatic gene selection using multi-objective optimization for RNA-seq deconvolution

(2021) Hananeh Aliee et al.   Cell Systems

CellPhoneDB: inferring cell–cell communication from combined expression of multi-subunit ligand–receptor complexes

(2020) Mirjana Efremova et al.   Nature Protocols

Spatially Resolved Transcriptomes—Next Generation Tools for Tissue Exploration

(2020) Michaela Asp et al.   BIOESSAYS

Odorant Receptor Inhibition Is Fundamental to Odor Encoding

(2020) Patrick Pfister et al.   CURRENT BIOLOGY

The Zonal Organization of Odorant Receptor Gene Choice in the Main Olfactory Epithelium of the Mouse

(2020) Bolek Zapiec et al.   Cell Reports

Multi-scale habitat modelling and predicting change in the distribution of tiger and leopard using random forest algorithm

(2020) Tahir A. Rather et al.   Scientific Reports

Down-Regulation of Ribosomal Protein RPS21 Inhibits Invasive Behavior of Osteosarcoma Cells Through the Inactivation of MAPK Pathway

(2020) Tao Wang et al.   Cancer Management and Research

Non-neuronal expression of SARS-CoV-2 entry genes in the olfactory system suggests mechanisms underlying COVID-19-associated anosmia

(2020) David H. Brann et al.   Science Advances

A Scalable, Multiplexed Assay for Decoding GPCR-Ligand Interactions with RNA Sequencing

(2019) Eric M. Jones et al.   Cell Systems

CYTL1 regulates bone homeostasis in mice by modulating osteogenesis of mesenchymal stem cells and osteoclastogenesis of bone marrow-derived macrophages

(2019) Youngnim Shin et al.   Cell Death & Disease

Odontogenic ameloblast-associated (ODAM) is inactivated in toothless/enamelless placental mammals and toothed whales

(2019) Mark S. Springer et al.   BMC EVOLUTIONARY BIOLOGY

Protein Cytl1: its role in chondrogenesis, cartilage homeostasis, and disease

(2019) Sipin Zhu et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

A transcriptomic atlas of mammalian olfactory mucosae reveals an evolutionary influence on food odor detection in humans

(2019) Luis R. Saraiva et al.   Science Advances

Lysosome-Rich Enterocytes Mediate Protein Absorption in the Vertebrate Gut

(2019) Jieun Park et al.   DEVELOPMENTAL CELL

Tests of the chromatographic theory of olfaction with highly soluble odors: a combined electro-olfactogram and computational fluid dynamics study in the mouse

(2019) David M. Coppola et al.   Biology Open

A Spatiotemporal Organ-Wide Gene Expression and Cell Atlas of the Developing Human Heart

(2019) Michaela Asp et al.   CELL

Structure and zonal expression of olfactory receptors in the olfactory epithelium of the goat, Capra hircus

(2018) Josh Elisha R. OCTURA et al.   JOURNAL OF VETERINARY MEDICAL SCIENCE

Acceleration of Olfactory Receptor Gene Loss in Primate Evolution: Possible Link to Anatomical Change in Sensory Systems and Dietary Transition

(2018) Yoshihito Niimura et al.   MOLECULAR BIOLOGY AND EVOLUTION

FGF20-Expressing, Wnt-Responsive Olfactory Epithelial Progenitors Regulate Underlying Turbinate Growth to Optimize Surface Area

(2018) Lu M. Yang et al.   DEVELOPMENTAL CELL

Dimensionality reduction for visualizing single-cell data using UMAP

(2018) Etienne Becht et al.   NATURE BIOTECHNOLOGY

The human olfactory cleft mucus proteome and its age-related changes

(2018) Keiichi Yoshikawa et al.   Scientific Reports

Immobility responses are induced by photoactivation of single glomerular species responsive to fox odour TMT

(2017) Harumi Saito et al.   Nature Communications

Visualizing the structure of RNA-seq expression data using grade of membership models

(2017) Kushal K. Dey et al.   PLoS Genetics

Variation in olfactory neuron repertoires is genetically controlled and environmentally modulated

(2017) Ximena Ibarra-Soria et al.   eLife

Cooperative interactions enable singular olfactory receptor expression in mouse olfactory neurons

(2017) Kevin Monahan et al.   eLife

Disabled-2: A modular scaffold protein with multifaceted functions in signaling

(2016) Carla V. Finkielstein et al.   BIOESSAYS

A Family of non-GPCR Chemosensors Defines an Alternative Logic for Mammalian Olfaction

(2016) Paul L. Greer et al.   CELL

The Evolving Neural and Genetic Architecture of Vertebrate Olfaction

(2016) Daniel M. Bear et al.   CURRENT BIOLOGY

Spatial Transcriptome for the Molecular Annotation of Lineage Fates and Cell Identity in Mid-gastrula Mouse Embryo

(2016) Guangdun Peng et al.   DEVELOPMENTAL CELL

Diffusion pseudotime robustly reconstructs lineage branching

(2016) Laleh Haghverdi et al.   NATURE METHODS

Mechanisms of ephrin–Eph signalling in development, physiology and disease

(2016) Artur Kania et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

A Sensor for Low Environmental Oxygen in the Mouse Main Olfactory Epithelium

(2016) Katherin Bleymehl et al.   NEURON

MOXD2, a Gene Possibly Associated with Olfaction, Is Frequently Inactivated in Birds

(2016) Chul Jun Goh et al.   PLoS One

An overview of topic modeling and its current applications in bioinformatics

(2016) Lin Liu et al.   SpringerPlus

destiny: diffusion maps for large-scale single-cell data in R

(2015) Philipp Angerer et al.   BIOINFORMATICS

Diffusion maps for high-dimensional single-cell analysis of differentiation data

(2015) Laleh Haghverdi et al.   BIOINFORMATICS

Trpc2-expressing sensory neurons in the mouse main olfactory epithelium of type B express the soluble guanylate cyclase Gucy1b2

(2015) Masayo Omura et al.   MOLECULAR AND CELLULAR NEUROSCIENCE

High-throughput spatial mapping of single-cell RNA-seq data to tissue of origin

(2015) Kaia Achim et al.   NATURE BIOTECHNOLOGY

Molecular profiling of activated olfactory neurons identifies odorant receptors for odors in vivo

(2015) Yue Jiang et al.   NATURE NEUROSCIENCE

Large-scale transcriptional profiling of chemosensory neurons identifies receptor-ligand pairs in vivo

(2015) Benoît von der Weid et al.   NATURE NEUROSCIENCE

Individual olfactory perception reveals meaningful nonolfactory genetic information

(2015) Lavi Secundo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Responsiveness of G protein-coupled odorant receptors is partially attributed to the activation mechanism

(2015) Yiqun Yu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Single-cell transcriptomics reveals receptor transformations during olfactory neurogenesis

(2015) N. K. Hanchate et al.   SCIENCE

Hierarchical deconstruction of mouse olfactory sensory neurons: from whole mucosa to single-cell RNA-seq

(2015) Luis R. Saraiva et al.   Scientific Reports

Molecular and neuronal homology between the olfactory systems of zebrafish and mouse

(2015) Luis R. Saraiva et al.   Scientific Reports

Nature’s Chemical Signatures in Human Olfaction: A Foodborne Perspective for Future Biotechnology

(2014) Andreas Dunkel et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Genome-wide RNA Tomography in the Zebrafish Embryo

(2014) Jan Philipp Junker et al.   CELL

The perceptual logic of smell

(2014) Lavi Secundo et al.   CURRENT OPINION IN NEUROBIOLOGY

Extreme expansion of the olfactory receptor gene repertoire in African elephants and evolutionary dynamics of orthologous gene groups in 13 placental mammals

(2014) Yoshihito Niimura et al.   GENOME RESEARCH

Tuning to Odor Solubility and Sorption Pattern in Olfactory Epithelial Responses

(2014) J. W. Scott et al.   JOURNAL OF NEUROSCIENCE

Olfactory Receptor Patterning in a Higher Primate

(2014) L. F. Horowitz et al.   JOURNAL OF NEUROSCIENCE

Frequent Loss and Alteration of the MOXD2 Gene in Catarrhines and Whales: A Possible Connection with the Evolution of Olfaction

(2014) Dong Seon Kim et al.   PLoS One

Anatomy, histochemistry, and immunohistochemistry of the olfactory subsystems in mice

(2014) Arthur W. Barrios et al.   Frontiers in Neuroanatomy

An electroolfactogram study of odor response patterns from the mouse olfactory epithelium with reference to receptor zones and odor sorptiveness

(2013) D. M. Coppola et al.   JOURNAL OF NEUROPHYSIOLOGY

An unsaturated aliphatic alcohol as a natural ligand for a mouse odorant receptor

(2013) Keiichi Yoshikawa et al.   Nature Chemical Biology

Olfactory Receptor and Neural Pathway Responsible for Highly Selective Sensing of Musk Odors

(2013) Mika Shirasu et al.   NEURON

Molecular events in the cell types of the olfactory epithelium during adult neurogenesis

(2013) Paula M Heron et al.   Molecular Brain

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Expression pattern, subcellular localization, and functional implications of ODAM in ameloblasts, odontoblasts, osteoblasts, and various cancer cells

(2012) Hye-Kyung Lee et al.   GENE EXPRESSION PATTERNS

Differential expression of components of the retinoic acid signaling pathway in the adult mouse olfactory epithelium

(2012) Carolyn E. Peluso et al.   JOURNAL OF COMPARATIVE NEUROLOGY

Genomics of mature and immature olfactory sensory neurons

(2012) Melissa D. Nickell et al.   JOURNAL OF COMPARATIVE NEUROLOGY

An Olfactory Subsystem that Mediates High-Sensitivity Detection of Volatile Amines

(2012) Rodrigo Pacifico et al.   Cell Reports

Functional Evolution of Mammalian Odorant Receptors

(2012) Kaylin A. Adipietro et al.   PLoS Genetics

LRP-1 and LRP-2 receptors function in the membrane neuron. Trafficking mechanisms and proteolytic processing in Alzheimer's disease

(2012) Carlos Spuch et al.   Frontiers in Physiology

ODORactor: a web server for deciphering olfactory coding

(2011) Xinyi Liu et al.   BIOINFORMATICS

A Large-Scale Analysis of Odor Coding in the Olfactory Epithelium

(2011) K. Nara et al.   JOURNAL OF NEUROSCIENCE

Ensembl BioMarts: a hub for data retrieval across taxonomic space

(2011) R. J. Kinsella et al.   Database-The Journal of Biological Databases and Curation

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Regional differences in olfactory epithelial homeostasis in the adult mouse

(2009) Viktoria Vedin et al.   JOURNAL OF COMPARATIVE NEUROLOGY

Molecular receptive range variation among mouse odorant receptors for aliphatic carboxylic acids

(2009) Sarah E. Repicky et al.   JOURNAL OF NEUROCHEMISTRY

Nasal Airflow Rate Affects the Sensitivity and Pattern of Glomerular Odorant Responses in the Mouse Olfactory Bulb

(2009) Y. Oka et al.   JOURNAL OF NEUROSCIENCE

SR1, a Mouse Odorant Receptor with an Unusually Broad Response Profile

(2009) X. Grosmaitre et al.   JOURNAL OF NEUROSCIENCE

Myr-Ric-8A Enhances G 15-Mediated Ca2+ Response of Vertebrate Olfactory Receptors

(2008) K. Yoshikawa et al.   CHEMICAL SENSES

Foxg1 Is Required for Development of the Vertebrate Olfactory System

(2008) C. D. Duggan et al.   JOURNAL OF NEUROSCIENCE