spOccupancy: An R package for single‐species, multi‐species, and integrated spatial occupancy models

Integrated community occupancy models: A framework to assess occurrence and biodiversity dynamics using multiple data sources

(2022) Jeffrey W. Doser et al.   Methods in Ecology and Evolution

Integrating automated acoustic vocalization data and point count surveys for estimation of bird abundance

(2021) Jeffrey W. Doser et al.   Methods in Ecology and Evolution

Spatial Gaussian processes improve multi‐species occupancy models when range boundaries are uncertain and nonoverlapping

(2021) Wilson J. Wright et al.   Ecology and Evolution

ubms: An R package for fitting hierarchical occupancy and N‐mixture abundance models in a Bayesian framework

(2021) Kenneth F. Kellner et al.   Methods in Ecology and Evolution

Efficient Bayesian analysis of occupancy models with logit link functions

(2019) Allan E. Clark et al.   Ecology and Evolution

The recent past and promising future for data integration methods to estimate species’ distributions

(2019) David A. W. Miller et al.   Methods in Ecology and Evolution

Data Integration for Large-Scale Models of Species Distributions

(2019) Nick J.B. Isaac et al.   TRENDS IN ECOLOGY & EVOLUTION

Joint species distribution modelling with the r ‐package H msc

(2019) Gleb Tikhonov et al.   Methods in Ecology and Evolution

Effects of spatial autocorrelation and imperfect detection on species distribution models

(2018) Jérôme Guélat et al.   Methods in Ecology and Evolution

Efficient Algorithms for Bayesian Nearest-Neighbor Gaussian Processes

(2018) Andrew O. Finley et al.   JOURNAL OF COMPUTATIONAL AND GRAPHICAL STATISTICS

Programming With Models: Writing Statistical Algorithms for General Model Structures With NIMBLE

(2017) Perry de Valpine et al.   JOURNAL OF COMPUTATIONAL AND GRAPHICAL STATISTICS

Stan: A Probabilistic Programming Language

(2017) Bob Carpenter et al.   Journal of Statistical Software

Hierarchical Nearest-Neighbor Gaussian Process Models for Large Geostatistical Datasets

(2016) Abhirup Datta et al.   JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION

A guide to Bayesian model selection for ecologists

(2015) M. B. Hooten et al.   ECOLOGICAL MONOGRAPHS

unmarked: AnRPackage for Fitting Hierarchical Models of Wildlife Occurrence and Abundance

(2015) Ian Fiske et al.   Journal of Statistical Software

Bayesian Inference for Logistic Models Using Pólya–Gamma Latent Variables

(2013) Nicholas G. Polson et al.   JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION

Spatial occupancy models for large data sets

(2012) Devin S. Johnson et al.   ECOLOGY

Comparing spatially-varying coefficients models for analysis of ecological data with non-stationary and anisotropic residual dependence

(2010) Andrew O. Finley   Methods in Ecology and Evolution

Impacts of forest fragmentation on species richness: a hierarchical approach to community modelling

(2009) Elise F. Zipkin et al.   JOURNAL OF APPLIED ECOLOGY