Ancient genomes from the Himalayas illuminate the genetic history of Tibetans and their Tibeto-Burman speaking neighbors

The history and evolution of the Denisovan-EPAS1 haplotype in Tibetans

(2021) Xinjun Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The transformation of cropping patterns from Late Neolithic to Early Iron Age (5900–2100 BP) in the Gansu–Qinghai region of northwest China

(2020) Lele Ren et al.   HOLOCENE

A late Middle Pleistocene Denisovan mandible from the Tibetan Plateau

(2019) Fahu Chen et al.   NATURE

Phylogenetic evidence for Sino-Tibetan origin in northern China in the Late Neolithic

(2019) Menghan Zhang et al.   NATURE

Dated language phylogenies shed light on the ancestry of Sino-Tibetan

(2019) Laurent Sagart et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The population history of northeastern Siberia since the Pleistocene

(2019) Martin Sikora et al.   NATURE

The formation of human populations in South and Central Asia

(2019) Vagheesh M. Narasimhan et al.   SCIENCE

Demographic History and Genetic Adaptation in the Himalayan Region Inferred from Genome-Wide SNP Genotypes of 49 Populations

(2018) Elena Arciero et al.   MOLECULAR BIOLOGY AND EVOLUTION

Reconstruction of Y-chromosome phylogeny reveals two neolithic expansions of Tibeto-Burman populations

(2018) Ling-Xiang Wang et al.   MOLECULAR GENETICS AND GENOMICS

The first horse herders and the impact of early Bronze Age steppe expansions into Asia

(2018) Peter de Barros Damgaard et al.   SCIENCE

The prehistoric peopling of Southeast Asia

(2018) Hugh McColl et al.   SCIENCE

Detecting past and ongoing natural selection among ethnically Tibetan women at high altitude in Nepal

(2018) Choongwon Jeong et al.   PLoS Genetics

The earliest human occupation of the high-altitude Tibetan Plateau 40 thousand to 30 thousand years ago

(2018) X. L. Zhang et al.   SCIENCE

The promise of discovering population-specific disease-associated genes in South Asia

(2017) Nathan Nakatsuka et al.   NATURE GENETICS

Permanent human occupation of the central Tibetan Plateau in the early Holocene

(2017) M. C. Meyer et al.   SCIENCE

Archaeogenomic evidence reveals prehistoric matrilineal dynasty

(2017) Douglas J. Kennett et al.   Nature Communications

The genomic landscape of Nepalese Tibeto-Burmans reveals new insights into the recent peopling of Southern Himalayas

(2017) Guido A. Gnecchi-Ruscone et al.   Scientific Reports

Evolutionary history of Tibetans inferred from whole-genome sequencing

(2017) Hao Hu et al.   PLoS Genetics

Ancestral Origins and Genetic History of Tibetan Highlanders

(2016) Dongsheng Lu et al.   AMERICAN JOURNAL OF HUMAN GENETICS

pong: fast analysis and visualization of latent clusters in population genetic data

(2016) Aaron A. Behr et al.   BIOINFORMATICS

Genomic insights into the origin of farming in the ancient Near East

(2016) Iosif Lazaridis et al.   NATURE

The Simons Genome Diversity Project: 300 genomes from 142 diverse populations

(2016) Swapan Mallick et al.   NATURE

The genetic history of Ice Age Europe

(2016) Qiaomei Fu et al.   NATURE

LNCediting: a database for functional effects of RNA editing in lncRNAs

(2016) Jing Gong et al.   NUCLEIC ACIDS RESEARCH

HaploGrep 2: mitochondrial haplogroup classification in the era of high-throughput sequencing

(2016) Hansi Weissensteiner et al.   NUCLEIC ACIDS RESEARCH

Long-term genetic stability and a high-altitude East Asian origin for the peoples of the high valleys of the Himalayan arc

(2016) Choongwon Jeong et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An efficient and scalable analysis framework for variant extraction and refinement from population-scale DNA sequence data

(2015) Goo Jun et al.   GENOME RESEARCH

Genome-wide patterns of selection in 230 ancient Eurasians

(2015) Iain Mathieson et al.   NATURE

Massive migration from the steppe was a source for Indo-European languages in Europe

(2015) Wolfgang Haak et al.   NATURE

Second-generation PLINK: rising to the challenge of larger and richer datasets

(2015) Christopher C Chang et al.   GigaScience

ANGSD: Analysis of Next Generation Sequencing Data

(2014) Thorfinn Sand Korneliussen et al.   BMC BIOINFORMATICS

Ancient human genomes suggest three ancestral populations for present-day Europeans

(2014) Iosif Lazaridis et al.   NATURE

Altitude adaptation in Tibetans caused by introgression of Denisovan-like DNA

(2014) Emilia Huerta-Sánchez et al.   NATURE

Genome sequence of a 45,000-year-old modern human from western Siberia

(2014) Qiaomei Fu et al.   NATURE

A genetic mechanism for Tibetan high-altitude adaptation

(2014) Felipe R Lorenzo et al.   NATURE GENETICS

Partial uracil-DNA-glycosylase treatment for screening of ancient DNA

(2014) N. Rohland et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Agriculture facilitated permanent human occupation of the Tibetan Plateau after 3600 B.P.

(2014) F. H. Chen et al.   SCIENCE

Genetic Evidence of Paleolithic Colonization and Neolithic Expansion of Modern Humans on the Tibetan Plateau

(2013) Xuebin Qi et al.   MOLECULAR BIOLOGY AND EVOLUTION

Identification of a Tibetan-Specific Mutation in the Hypoxic Gene EGLN1 and Its Contribution to High-Altitude Adaptation

(2013) Kun Xiang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans

(2013) Maanasa Raghavan et al.   NATURE

Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments

(2013) J. Dabney et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ancient Admixture in Human History

(2012) N. Patterson et al.   GENETICS

AKT3, ANGPTL4, eNOS3, and VEGFA associations with high altitude sickness in Han and Tibetan Chinese at the Qinghai-Tibetan Plateau

(2012) Norman E. Buroker et al.   INTERNATIONAL JOURNAL OF HEMATOLOGY

Spatial and temporal variety of prehistoric human settlement and its influencing factors in the upper Yellow River valley, Qinghai Province, China

(2012) Guanghui Dong et al.   JOURNAL OF ARCHAEOLOGICAL SCIENCE

Shared and Unique Components of Human Population Structure and Genome-Wide Signals of Positive Selection in South Asia

(2011) Mait Metspalu et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Peopling the Tibetan Plateau: Insights from Archaeology

(2011) Mark Aldenderfer   HIGH ALTITUDE MEDICINE & BIOLOGY

Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform

(2011) Martin Kircher et al.   NUCLEIC ACIDS RESEARCH

A mitochondrial revelation of early human migrations to the Tibetan Plateau before and after the last glacial maximum

(2010) Zhendong Qin et al.   AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY

Natural selection on EPAS1 (HIF2 ) associated with low hemoglobin concentration in Tibetan highlanders

(2010) C. M. Beall et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genetic Evidence for High-Altitude Adaptation in Tibet

(2010) T. S. Simonson et al.   SCIENCE

Sequencing of 50 Human Exomes Reveals Adaptation to High Altitude

(2010) X. Yi et al.   SCIENCE

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

Mitochondrial genome evidence reveals successful Late Paleolithic settlement on the Tibetan Plateau

(2009) Mian Zhao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Worldwide Human Relationships Inferred from Genome-Wide Patterns of Variation

(2008) J. Z. Li et al.   SCIENCE