A comprehensive temporal patterning gene network in Drosophila medulla neuroblasts revealed by single-cell RNA sequencing

Anomalous collapses of Nares Strait ice arches leads to enhanced export of Arctic sea ice

(2021) G. W. K. Moore et al.   Nature Communications

Knock-in mutations of scarecrow, a Drosophila homolog of mammalian Nkx2.1, reveal a novel function required for development of the optic lobe in Drosophila melanogaster

(2020) Siuk Yoo et al.   DEVELOPMENTAL BIOLOGY

Foxn4 is a temporal identity factor conferring mid/late-early retinal competence and involved in retinal synaptogenesis

(2020) Shuting Liu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Foxp1 Regulates Neural Stem Cell Self-Renewal and Bias Toward Deep Layer Cortical Fates

(2020) Caroline Alayne Pearson et al.   Cell Reports

Temporal progression of Drosophila medulla neuroblasts generates the transcription factor combination to control T1 neuron morphogenesis

(2020) Vamsikrishna G. Naidu et al.   DEVELOPMENTAL BIOLOGY

Zygotic pioneer factor activity of Odd-paired/Zic is necessary for late function of the Drosophila segmentation network

(2020) Isabella V Soluri et al.   eLife

Temporal patterning in neural progenitors: from Drosophila development to childhood cancers

(2020) Cédric Maurange   Disease Models & Mechanisms

Odd-paired is a pioneer-like factor that coordinates with Zelda to control gene expression in embryos

(2020) Theodora Koromila et al.   eLife

Emerging Roles of Single-Cell Multi-Omics in Studying Developmental Temporal Patterning

(2020) Andrea Lopes et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Sequential activation of transcriptional repressors promotes progenitor commitment by silencing stem cell identity genes

(2020) Noemi Rives-Quinto et al.   eLife

The single-cell transcriptional landscape of mammalian organogenesis

(2019) Junyue Cao et al.   NATURE

Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing mouse spinal cord

(2019) Julien Delile et al.   DEVELOPMENT

E93 Integrates Neuroblast Intrinsic State with Developmental Time to Terminate MB Neurogenesis via Autophagy

(2019) Matthew C. Pahl et al.   CURRENT BIOLOGY

Single-Cell RNA-Seq Analysis of Retinal Development Identifies NFI Factors as Regulating Mitotic Exit and Late-Born Cell Specification

(2019) Brian S. Clark et al.   NEURON

Temporal patterning of apical progenitors and their daughter neurons in the developing neocortex

(2019) L. Telley et al.   SCIENCE

Principles of progenitor temporal patterning in the developing invertebrate and vertebrate nervous system

(2019) Polina Oberst et al.   CURRENT OPINION IN NEUROBIOLOGY

Neuronal cell types in the fly: single-cell anatomy meets single-cell genomics

(2019) Alexander Shakeel Bates et al.   CURRENT OPINION IN NEUROBIOLOGY

The transcription factor odd-paired regulates temporal identity in transit-amplifying neural progenitors via an incoherent feed-forward loop

(2019) Merve Deniz Abdusselamoglu et al.   eLife

Establishing neuronal diversity in the spinal cord: a time and a place

(2019) Andreas Sagner et al.   DEVELOPMENT

Coordination between stochastic and deterministic specification in the Drosophila visual system

(2019) Maximilien Courgeon et al.   SCIENCE

Drosophila Neuroblast Selection Is Gated by Notch, Snail, SoxB, and EMT Gene Interplay

(2019) Badrul Arefin et al.   Cell Reports

Batch effects in single-cell RNA-sequencing data are corrected by matching mutual nearest neighbors

(2018) Laleh Haghverdi et al.   NATURE BIOTECHNOLOGY

Integrating single-cell transcriptomic data across different conditions, technologies, and species

(2018) Andrew Butler et al.   NATURE BIOTECHNOLOGY

Exploring the Complexity of Cortical Development Using Single-Cell Transcriptomics

(2018) Hyobin Jeong et al.   Frontiers in Neuroscience

Neuronal specification in space and time

(2018) Isabel Holguera et al.   SCIENCE

The Scalloped and Nerfin-1 Transcription Factors Cooperate to Maintain Neuronal Cell Fate

(2018) Joseph H.A. Vissers et al.   Cell Reports

Temporal control of Drosophila central nervous system development

(2018) Rosa Linda Miyares et al.   CURRENT OPINION IN NEUROBIOLOGY

Integration of temporal and spatial patterning generates neural diversity

(2017) Ted Erclik et al.   NATURE

Reversed graph embedding resolves complex single-cell trajectories

(2017) Xiaojie Qiu et al.   NATURE METHODS

Comprehensive Characterization of the Complex lola Locus Reveals a Novel Role in the Octopaminergic Pathway via Tyramine Beta-Hydroxylase Regulation

(2017) Nadja Dinges et al.   Cell Reports

Steroid hormone induction of temporal gene expression in Drosophila brain neuroblasts generates neuronal and glial diversity

(2017) Mubarak Hussain Syed et al.   eLife

Broad-complex, tramtrack, and bric-à-brac (BTB) proteins: Critical regulators of development

(2016) Edwin Chaharbakhshi et al.   GENESIS

LHX2 Interacts with the NuRD Complex and Regulates Cortical Neuron Subtype Determinants Fezf2 and Sox11

(2016) Bhavana Muralidharan et al.   JOURNAL OF NEUROSCIENCE

Cell-cycle-independent transitions in temporal identity of mammalian neural progenitor cells

(2016) Mayumi Okamoto et al.   Nature Communications

Zbtb20 modulates the sequential generation of neuronal layers in developing cortex

(2016) Anton B. Tonchev et al.   Molecular Brain

The transcription factor Nerfin-1 prevents reversion of neurons into neural stem cells

(2015) Francesca Froldi et al.   GENES & DEVELOPMENT

A Conserved Regulatory Logic Controls Temporal Identity in Mouse Neural Progenitors

(2015) Pierre Mattar et al.   NEURON

Opposing intrinsic temporal gradients guide neural stem cell production of varied neuronal fates

(2015) Z. Liu et al.   SCIENCE

Transcriptional selectors, masters, and combinatorial codes: regulatory principles of neural subtype specification

(2015) Douglas W. Allan et al.   Wiley Interdisciplinary Reviews-Developmental Biology

SWI/SNF Complex Prevents Lineage Reversion and Induces Temporal Patterning in Neural Stem Cells

(2014) Elif Eroglu et al.   CELL

Temporal Patterning of Neuroblasts Controls Notch-Mediated Cell Survival through Regulation of Hid or Reaper

(2014) Claire Bertet et al.   CELL

Earmuff restricts progenitor cell potential by attenuating the competence to respond to self-renewal factors

(2014) D. H. Janssens et al.   DEVELOPMENT

Dedifferentiation of Neurons Precedes Tumor Formation in lola Mutants

(2014) Tony D. Southall et al.   DEVELOPMENTAL CELL

The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells

(2014) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

The Brm-HDAC3-Erm repressor complex suppresses dedifferentiation in Drosophila type II neuroblast lineages

(2014) Chwee Tat Koe et al.   eLife

SoxNeuro orchestrates central nervous system specification and differentiation in Drosophila and is only partially redundant with Dichaete

(2014) Enrico Ferrero et al.   GENOME BIOLOGY

Combinatorial temporal patterning in progenitors expands neural diversity

(2013) Omer Ali Bayraktar et al.   NATURE

Temporal patterning of Drosophila medulla neuroblasts controls neural fates

(2013) Xin Li et al.   NATURE

Ikaros promotes early-born neuronal fates in the cerebral cortex

(2013) J. M. Alsio et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Foxg1 Coordinates the Switch from Nonradially to Radially Migrating Glutamatergic Subtypes in the Neocortex through Spatiotemporal Repression

(2013) Takuma Kumamoto et al.   Cell Reports

Transcriptome analysis of Drosophila CNS midline cells reveals diverse peptidergic properties and a role for castor in neuronal differentiation

(2012) Joseph R. Fontana et al.   DEVELOPMENTAL BIOLOGY

Cell type–specific genomics of Drosophila neurons

(2012) Gilbert L. Henry et al.   NUCLEIC ACIDS RESEARCH

Concentric zones, cell migration and neuronal circuits in the Drosophila visual center

(2011) E. Hasegawa et al.   DEVELOPMENT

Downregulation of Notch mediates the seamless transition of individual Drosophila neuroepithelial progenitors into optic medullar neuroblasts during prolonged G1

(2011) Minako Orihara-Ono et al.   DEVELOPMENTAL BIOLOGY

Generating neuronal diversity in theDrosophilacentral nervous system

(2011) Suewei Lin et al.   DEVELOPMENTAL DYNAMICS

Automated protein-DNA interaction screening of Drosophila regulatory elements

(2011) Korneel Hens et al.   NATURE METHODS

Prospero and Pax2 combinatorially control neural cell fate decisions by modulating Ras- and Notch-dependent signaling

(2011) Mark Charlton-Perkins et al.   Neural Development

Notch regulates the switch from symmetric to asymmetric neural stem cell division in the Drosophila optic lobe

(2010) B. Egger et al.   DEVELOPMENT

Coordinated sequential action of EGFR and Notch signaling pathways regulates proneural wave progression in the Drosophila optic lobe

(2010) T. Yasugi et al.   DEVELOPMENT

dFezf/Earmuff Maintains the Restricted Developmental Potential of Intermediate Neural Progenitors in Drosophila

(2010) Mo Weng et al.   DEVELOPMENTAL CELL

Neuronal Subtype Specification within a Lineage by Opposing Temporal Feed-Forward Loops

(2009) Magnus Baumgardt et al.   CELL

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Nuclear Receptor Unfulfilled Regulates Axonal Guidance and Cell Identity of Drosophila Mushroom Body Neurons

(2009) Suewei Lin et al.   PLoS One

Temporal Transcription Factors and Their Targets Schedule the End of Neural Proliferation in Drosophila

(2008) Cédric Maurange et al.   CELL

Drosophila optic lobe neuroblasts triggered by a wave of proneural gene expression that is negatively regulated by JAK/STAT

(2008) T. Yasugi et al.   DEVELOPMENT

Requirement for COUP-TFI and II in the temporal specification of neural stem cells in CNS development

(2008) Hayato Naka et al.   NATURE NEUROSCIENCE

Ikaros Confers Early Temporal Competence to Mouse Retinal Progenitor Cells

(2008) Jimmy Elliott et al.   NEURON

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

(2008) Da Wei Huang et al.   NUCLEIC ACIDS RESEARCH

The Fezf2-Ctip2 genetic pathway regulates the fate choice of subcortical projection neurons in the developing cerebral cortex

(2008) B. Chen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Tools for neuroanatomy and neurogenetics in Drosophila

(2008) B. D. Pfeiffer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA