Molecular Epidemiology of SARS-CoV-2 in Tunisia (North Africa) through Several Successive Waves of COVID-19

Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK

(2021) Louis du Plessis et al.   SCIENCE

Identification of SARS-CoV-2 spike mutations that attenuate monoclonal and serum antibody neutralization

(2021) Zhuoming Liu et al.   Cell Host & Microbe

High throughput detection and genetic epidemiology of SARS-CoV-2 using COVIDSeq next-generation sequencing

(2021) Rahul C. Bhoyar et al.   PLoS One

Risk of mortality in patients infected with SARS-CoV-2 variant of concern 202012/1: matched cohort study

(2021) Robert Challen et al.   BMJ-British Medical Journal

Molecular Analysis of SARS-CoV-2 Genetic Lineages in Jordan: Tracking the Introduction and Spread of COVID-19 UK Variant of Concern at a Country Level

(2021) Malik Sallam et al.   Pathogens

Genomics and epidemiology of the P.1 SARS-CoV-2 lineage in Manaus, Brazil

(2021) Nuno R. Faria et al.   SCIENCE

Multiple Early Introductions of SARS-CoV-2 to Cape Town, South Africa

(2021) Susan Engelbrecht et al.   Viruses-Basel

Molecular epidemiology of SARS-CoV-2 in Cyprus

(2021) Jan Richter et al.   PLoS One

Distribution of SARS-CoV-2 Lineages in the Czech Republic, Analysis of Data from the First Year of the Pandemic

(2021) Petr Klempt et al.   Microorganisms

E484K and N501Y SARS-CoV 2 spike mutants Increase ACE2 recognition but reduce affinity for neutralizing antibody

(2021) Sandipan Chakraborty   INTERNATIONAL IMMUNOPHARMACOLOGY

Lessons drawn from China and South Korea for managing COVID-19 epidemic: Insights from a comparative modeling study

(2021) Biao Tang et al.   ISA TRANSACTIONS

Characterization of the novel SARS‐CoV‐2 Omicron (B.1.1.529) variant of concern and its global perspective

(2021) Shailendra K. Saxena et al.   JOURNAL OF MEDICAL VIROLOGY

Transmission dynamics and successful control measures of SARS-CoV-2 in the mega-size city of Guangzhou, China

(2021) Hongjun Zhao et al.   MEDICINE

Sequencing Using a Two-Step Strategy Reveals High Genetic Diversity in the S Gene of SARS-CoV-2 after a High-Transmission Period in Tunis, Tunisia

(2021) Wasfi Fares et al.   Microbiology Spectrum

A new coronavirus associated with human respiratory disease in China

(2020) Fan Wu et al.   NATURE

A Novel Coronavirus from Patients with Pneumonia in China, 2019

(2020) Na Zhu et al.   NEW ENGLAND JOURNAL OF MEDICINE

The species Severe acute respiratory syndrome-related coronavirus: classifying 2019-nCoV and naming it SARS-CoV-2

(2020)   Nature Microbiology

A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology

(2020) Andrew Rambaut et al.   Nature Microbiology

SARS-CoV-2 Surveillance in the Middle East and North Africa: Longitudinal Trend Analysis

(2020) Lori Post et al.   JOURNAL OF MEDICAL INTERNET RESEARCH

W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis

(2016) Jana Trifinopoulos et al.   NUCLEIC ACIDS RESEARCH

Rapid evaluation and quality control of next generation sequencing data with FaQCs

(2014) Chien-Chi Lo et al.   BMC BIOINFORMATICS

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION