Gene co-expression reveals the modularity and integration of C4 and CAM in Portulaca

Phosphorolytic degradation of leaf starch via plastidic α-glucan phosphorylase leads to optimized plant growth and water use efficiency over the diel phases of Crassulacean acid metabolism

(2021) Nathalie Ceusters et al.   JOURNAL OF EXPERIMENTAL BOTANY

Underwater CAM photosynthesis elucidated by Isoetes genome

(2021) David Wickell et al.   Nature Communications

Exploring C4–CAM plasticity within the Portulaca oleracea complex

(2020) Renata Callegari Ferrari et al.   Scientific Reports

Network-based microsynteny analysis identifies major differences and genomic outliers in mammalian and angiosperm genomes

(2019) Tao Zhao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolutionary trajectories, accessibility, and other metaphors: the case of C 4 and CAM photosynthesis

(2019) Erika J Edwards   NEW PHYTOLOGIST

The evolution of CAM photosynthesis in Australian Calandrinia reveals lability in C3+CAM phenotypes and a possible constraint to the evolution of strong CAM

(2019) Lillian P Hancock et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

Time of day and network reprogramming during drought induced CAM photosynthesis in Sedum album

(2019) Ching Man Wai et al.   PLoS Genetics

C 4 and crassulacean acid metabolism within a single leaf: deciphering key components behind a rare photosynthetic adaptation

(2019) Renata C. Ferrari et al.   NEW PHYTOLOGIST

Crassulacean acid metabolism in the Basellaceae (Caryophyllales)

(2018) J. A. M. Holtum et al.   PLANT BIOLOGY

First report of C4/CAM-cycling photosynthetic pathway in a succulent grass, Spinifex littoreus (Brum. f.) Merr., in coastal regions of Taiwan

(2018) Che-Ling Ho et al.   FLORA

Different CO2 acclimation strategies in juvenile and mature leaves of Ottelia alismoides

(2018) Wen Min Huang et al.   PHOTOSYNTHESIS RESEARCH

Evolution of Portulacineae Marked by Gene Tree Conflict and Gene Family Expansion Associated with Adaptation to Harsh Environments

(2018) Ning Wang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Optional use of CAM photosynthesis in two C 4 species, Portulaca cyclophylla and Portulaca digyna

(2017) Joseph A.M. Holtum et al.   JOURNAL OF PLANT PHYSIOLOGY

Highly Expressed Genes Are Preferentially Co-Opted for C4 Photosynthesis

(2017) Jose J Moreno-Villena et al.   MOLECULAR BIOLOGY AND EVOLUTION

Differential analysis of RNA-seq incorporating quantification uncertainty

(2017) Harold Pimentel et al.   NATURE METHODS

JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework

(2017) Aziz Khan et al.   NUCLEIC ACIDS RESEARCH

On the Evolutionary Origin of CAM Photosynthesis

(2017) Andrea Bräutigam et al.   PLANT PHYSIOLOGY

The Kalanchoë genome provides insights into convergent evolution and building blocks of crassulacean acid metabolism

(2017) Xiaohan Yang et al.   Nature Communications

Orchestration of carbohydrate processing for crassulacean acid metabolism

(2016) Anne M Borland et al.   CURRENT OPINION IN PLANT BIOLOGY

Unique photosynthetic phenotypes inPortulaca(Portulacaceae): C3-C4intermediates and NAD-ME C4species with Pilosoid-type Kranz anatomy

(2016) Elena V. Voznesenskaya et al.   JOURNAL OF EXPERIMENTAL BOTANY

A portrait of the C4photosynthetic family on the 50th anniversary of its discovery: species number, evolutionary lineages, and Hall of Fame

(2016) Rowan F. Sage   JOURNAL OF EXPERIMENTAL BOTANY

Expression of tandem gene duplicates is often greater than twofold

(2016) David W. Loehlin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Reversible Burst of Transcriptional Changes during Induction of Crassulacean Acid Metabolism in Talinum triangulare

(2015) Dominik Brilhaus et al.   PLANT PHYSIOLOGY

Modified CTAB and TRIzol Protocols Improve RNA Extraction from Chemically Complex Embryophyta

(2015) Ingrid E. Jordon-Thaden et al.   Applications in Plant Sciences

Physiological advantages of C4grasses in the field: a comparative experiment demonstrating the importance of drought

(2014) Samuel H. Taylor et al.   GLOBAL CHANGE BIOLOGY

Shared origins of a key enzyme during the evolution of C4 and CAM metabolism

(2014) Pascal-Antoine Christin et al.   JOURNAL OF EXPERIMENTAL BOTANY

RNA-seq Reveals Transcriptomic Shock Involving Transposable Elements Reactivation in Hybrids of Young Lake Whitefish Species

(2014) Anne-Marie Dion-Côté et al.   MOLECULAR BIOLOGY AND EVOLUTION

Engineering crassulacean acid metabolism to improve water-use efficiency

(2014) Anne M. Borland et al.   TRENDS IN PLANT SCIENCE

The role of photorespiration during the evolution of C4 photosynthesis in the genus Flaveria

(2014) Julia Mallmann et al.   eLife

Evolution of leaf anatomy and photosynthetic pathways in Portulacaceae

(2013) Gilberto Ocampo et al.   AMERICAN JOURNAL OF BOTANY

A latent capacity for evolutionary innovation through exaptation in metabolic systems

(2013) Aditya Barve et al.   NATURE

Biochemical and biophysical CO2 concentrating mechanisms in two species of freshwater macrophyte within the genus Ottelia (Hydrocharitaceae)

(2013) Yizhi Zhang et al.   PHOTOSYNTHESIS RESEARCH

Evolution of C4 Photosynthesis in the Genus Flaveria: Establishment of a Photorespiratory CO2 Pump

(2013) S. Schulze et al.   PLANT CELL

The evolutionary origins of modularity

(2013) J. Clune et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Phenotypic landscape inference reveals multiple evolutionary paths to C4 photosynthesis

(2013) Ben P Williams et al.   eLife

Photorespiration and the Evolution of C4Photosynthesis

(2012) Rowan F. Sage et al.   Annual Review of Plant Biology

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

Angiosperm Responses to a Low-CO2 World: CAM and C4 Photosynthesis as Parallel Evolutionary Trajectories

(2012) Erika J. Edwards et al.   INTERNATIONAL JOURNAL OF PLANT SCIENCES

Characterizing Regulatory and Functional Differentiation between Maize Mesophyll and Bundle Sheath Cells by Transcriptomic Analysis

(2012) Y.-M. Chang et al.   PLANT PHYSIOLOGY

Arabidopsis circadian clock protein, TOC1, is a DNA-binding transcription factor

(2012) J. M. Gendron et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

FIMO: scanning for occurrences of a given motif

(2011) Charles E. Grant et al.   BIOINFORMATICS

The role of transitory starch in C3, CAM, and C4 metabolism and opportunities for engineering leaf starch accumulation

(2011) Sean E. Weise et al.   JOURNAL OF EXPERIMENTAL BOTANY

C4 eudicots are not younger than C4 monocots

(2011) Pascal-Antoine Christin et al.   JOURNAL OF EXPERIMENTAL BOTANY

Evolution of the C4 photosynthetic mechanism: are there really three C4 acid decarboxylation types?

(2011) R. T. Furbank   JOURNAL OF EXPERIMENTAL BOTANY

Molecular phylogenetics, historical biogeography, and chromosome number evolution of Portulaca (Portulacaceae)

(2011) Gilberto Ocampo et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Contemporaneous and recent radiations of the world's major succulent plant lineages

(2011) M. Arakaki et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Regulation of Gene Expression Required for C4Photosynthesis

(2010) Julian M. Hibberd et al.   Annual Review of Plant Biology

Motif Enrichment Analysis: a unified framework and an evaluation on ChIP data

(2010) Robert C McLeay et al.   BMC BIOINFORMATICS

Revealing diversity in structural and biochemical forms of C4 photosynthesis and a C3-C4 intermediate in genus Portulaca L. (Portulacaceae)

(2010) E. V. Voznesenskaya et al.   JOURNAL OF EXPERIMENTAL BOTANY

Reconstruction of Metabolic Pathways, Protein Expression, and Homeostasis Machineries across Maize Bundle Sheath and Mesophyll Chloroplasts: Large-Scale Quantitative Proteomics Using the First Maize Genome Assembly

(2010) G. Friso et al.   PLANT PHYSIOLOGY

The Origins of C4 Grasslands: Integrating Evolutionary and Ecosystem Science

(2010) E. J. Edwards et al.   SCIENCE

Anatomical variation in Cactaceae and relatives: Trait lability and evolutionary innovation

(2009) R. Matthew Ogburn et al.   AMERICAN JOURNAL OF BOTANY

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

C4 photosynthesis and water stress

(2008) O. Ghannoum   ANNALS OF BOTANY

Crassulacean acid metabolism and fitness under water deficit stress: if not for carbon gain, what is facultative CAM good for?

(2008) Ana Herrera   ANNALS OF BOTANY

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

Comparative Proteomics of Chloroplast Envelopes from C3 and C4 Plants Reveals Specific Adaptations of the Plastid Envelope to C4 Photosynthesis and Candidate Proteins Required for Maintaining C4 Metabolite Fluxes

(2008) A. Brautigam et al.   PLANT PHYSIOLOGY