SlERF.F12 modulates the transition to ripening in tomato fruit by recruiting the co-repressor TOPLESS and histone deacetylases to repress key ripening genes

The transcription factor SlHY5 regulates the ripening of tomato fruit at both the transcriptional and translational levels

(2021) Weihao Wang et al.   Horticulture Research

Molecular and Hormonal Mechanisms Regulating Fleshy Fruit Ripening

(2021) Shan Li et al.   Cells

Transcriptome and metabolite profiling analyses provide insight into volatile compounds of the apple cultivar ‘Ruixue’ and its parents during fruit development

(2021) Xiaojie Liu et al.   BMC PLANT BIOLOGY

Like Heterochromatin Protein 1b represses fruit ripening via regulating the H3K27me3 levels in ripening‐related genes in tomato

(2020) Qi Liang et al.   NEW PHYTOLOGIST

MicroTom Metabolic Network: Rewiring Tomato Metabolic Regulatory Network throughout the Growth Cycle

(2020) Yan Li et al.   Molecular Plant

ETR1/RDO3 Regulates Seed Dormancy by Relieving the Inhibitory Effect of the ERF12-TPL Complex on DELAY OF GERMINATION1 Expression

(2019) Xiaoying Li et al.   PLANT CELL

Transcriptional network regulation of the brassinosteroid signaling pathway by the BES1–TPL–HDA19 co-repressor complex

(2019) Hyemin Kim et al.   PLANTA

Histone Deacetylase CpHDA3 Is Functionally Associated with CpERF9 in Suppression of CpPME1/2 and CpPG5 Genes during Papaya Fruit Ripening

(2019) Changchun Fu et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Roles of RIN and ethylene in tomato fruit ripening and ripening‐associated traits

(2019) Shan Li et al.   NEW PHYTOLOGIST

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

(2018) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

SlPti4 Affects Regulation of Fruit Ripening, Seed Germination and Stress Responses by Modulating ABA Signaling in Tomato

(2018) Yufei Sun et al.   PLANT AND CELL PHYSIOLOGY

The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato

(2018) Xuemin Ma et al.   PLANT PHYSIOLOGY

The RIN-regulated Small Auxin-Up RNA SAUR69 is involved in the unripe-to-ripe phase transition of tomato fruit via enhancement of the sensitivity to ethylene

(2018) Jun-Hye Shin et al.   NEW PHYTOLOGIST

A histone deacetylase gene, SlHDA3, acts as a negative regulator of fruit ripening and carotenoid accumulation

(2017) Jun-E Guo et al.   PLANT CELL REPORTS

Critical roles of DNA demethylation in the activation of ripening-induced genes and inhibition of ripening-repressed genes in tomato fruit

(2017) Zhaobo Lang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Multiple regulatory roles of AP2/ERF transcription factor in angiosperm

(2017) Chao Gu et al.   Botanical Studies

The tomato histone deacetylase SlHDA1 contributes to the repression of fruit ripening and carotenoid accumulation

(2017) Jun-E Guo et al.   Scientific Reports

Comprehensive profiling of Ethylene Response Factors expression identifies ripening-associated ERF genes and their link to key regulators of fruit ripening in tomato (Solanum lycopersicum).

(2016) Mingchun Liu et al.   PLANT PHYSIOLOGY

Distinct transcriptome profiles reveal gene expression patterns during fruit development and maturation in five main cultivated species of pear (Pyrus L.)

(2016) Ming-Yue Zhang et al.   Scientific Reports

Overexpression of GmERF5, a new member of the soybean EAR motif-containing ERF transcription factor, enhances resistance to Phytophthora sojae in soybean

(2015) Lidong Dong et al.   JOURNAL OF EXPERIMENTAL BOTANY

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

Ethylene Response Factors: A Key Regulatory Hub in Hormone and Stress Signaling

(2015) Maren Müller et al.   PLANT PHYSIOLOGY

Mechanistic Insights in Ethylene Perception and Signal Transduction

(2015) Chuanli Ju et al.   PLANT PHYSIOLOGY

A DEMETER-like DNA demethylase governs tomato fruit ripening

(2015) Ruie Liu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Multi-level engineering facilitates the production of phenylpropanoid compounds in tomato

(2015) Yang Zhang et al.   Nature Communications

Auxin Response Factor SlARF2 Is an Essential Component of the Regulatory Mechanism Controlling Fruit Ripening in Tomato

(2015) Yanwei Hao et al.   PLoS Genetics

The tomato DWD motif-containing protein DDI1 interacts with the CUL4–DDB1-based ubiquitin ligase and plays a pivotal role in abiotic stress responses

(2014) Min Miao et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Transcriptional control of fleshy fruit development and ripening

(2014) Rumyana Karlova et al.   JOURNAL OF EXPERIMENTAL BOTANY

The chimeric repressor version of anEthylene Response Factor(ERF) family member,Sl-ERF.B3, shows contrasting effects on tomato fruit ripening

(2014) Mingchun Liu et al.   NEW PHYTOLOGIST

Control of early seedling development by BES1/TPL/HDA19-mediated epigenetic regulation of ABI3

(2014) Hojin Ryu et al.   Nature Communications

TOPLESS mediates brassinosteroid-induced transcriptional repression through interaction with BZR1

(2014) Eunkyoo Oh et al.   Nature Communications

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

Single-base resolution methylomes of tomato fruit development reveal epigenome modifications associated with ripening

(2013) Silin Zhong et al.   NATURE BIOTECHNOLOGY

A dominant repressor version of the tomatoSl-ERF.B3gene confers ethylene hypersensitivity via feedback regulation of ethylene signaling and response components

(2013) Mingchun Liu et al.   PLANT JOURNAL

Rapid phenotyping of the tomato fruit model, Micro-Tom, with a portable VIS–NIR spectrometer

(2013) Martin Ecarnot et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene

(2012) Julien Pirrello et al.   BMC PLANT BIOLOGY

Isolation and characterization of a bread wheat salinity responsive ERF transcription factor

(2012) Wei Dong et al.   GENE

SlNAC1, a stress-related transcription factor, is fine-tuned on both the transcriptional and the post-translational level

(2012) Weizao Huang et al.   NEW PHYTOLOGIST

clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters

(2012) Guangchuang Yu et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Regulation of ripening and opportunities for control in tomato and other fruits

(2012) Graham B. Seymour et al.   PLANT BIOTECHNOLOGY JOURNAL

Transcriptional corepressor TOPLESS complexes with pseudoresponse regulator proteins and histone deacetylases to regulate circadian transcription

(2012) L. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genetics and Control of Tomato Fruit Ripening and Quality Attributes

(2011) Harry J. Klee et al.   Annual Review of Genetics

EAR motif-mediated transcriptional repression in plants

(2011) Sateesh Kagale et al.   Epigenetics

An EAR-motif-containing ERF transcription factor affects herbivore-induced signaling, defense and resistance in rice

(2011) Jing Lu et al.   PLANT JOURNAL

Combined transcriptome, genetic diversity and metabolite profiling in tomato fruit reveals that the ethylene response factor SlERF6 plays an important role in ripening and carotenoid accumulation

(2011) Je Min Lee et al.   PLANT JOURNAL

The TOPLESS Interactome: A Framework for Gene Repression in Arabidopsis

(2011) B. Causier et al.   PLANT PHYSIOLOGY

The Arabidopsis EAR-motif-containing protein RAP2.1 functions as an active transcriptional repressor to keep stress responses under tight control

(2010) Chun-Juan Dong et al.   BMC PLANT BIOLOGY

Kiwifruit EIL and ERF Genes Involved in Regulating Fruit Ripening

(2010) X.-r. Yin et al.   PLANT PHYSIOLOGY

Ectopic expression of an EAR motif deletion mutant of SlERF3 enhances tolerance to salt stress and Ralstonia solanacearum in tomato

(2010) I-Chun Pan et al.   PLANTA

Recent advances in ethylene research

(2009) Z. Lin et al.   JOURNAL OF EXPERIMENTAL BOTANY

Isolation and characterization of a novel EAR-motif-containing gene GmERF4 from soybean (Glycine max L.)

(2009) Gaiyun Zhang et al.   MOLECULAR BIOLOGY REPORTS

SodERF3, a Novel Sugarcane Ethylene Responsive Factor (ERF), Enhances Salt and Drought Tolerance when Overexpressed in Tobacco Plants

(2008) L. E. Trujillo et al.   PLANT AND CELL PHYSIOLOGY

A transcriptional repression motif in the MADS factor AGL15 is involved in recruitment of histone deacetylase complex components

(2007) Kristine Hill et al.   PLANT JOURNAL