Histone H1 binding to nucleosome arrays depends on linker DNA length and trajectory

Topological Polymorphism of Nucleosome Fibers and Folding of Chromatin

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Stability and folding pathways of tetra-nucleosome from six-dimensional free energy surface

(2021) Xinqiang Ding et al.   Nature Communications

Structures and Functions of Chromatin Fibers

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Cell-free genomics reveal intrinsic, cooperative and competitive determinants of chromatin interactions

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Local states of chromatin compaction at transcription start sites control transcription levels

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Ruler elements in chromatin remodelers set nucleosome array spacing and phasing

(2021) Elisa Oberbeckmann et al.   Nature Communications

Beads on a string—nucleosome array arrangements and folding of the chromatin fiber

(2020) Sandro Baldi et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Role of cell-type specific nucleosome positioning in inducible activation of mammalian promoters

(2020) Agata Oruba et al.   Nature Communications

Nucleosome-bound SOX2 and SOX11 structures elucidate pioneer factor function

(2020) Svetlana O. Dodonova et al.   NATURE

Distinct Structures and Dynamics of Chromatosomes with Different Human Linker Histone Isoforms

(2020) Bing-Rui Zhou et al.   MOLECULAR CELL

Sub-nucleosomal Genome Structure Reveals Distinct Nucleosome Folding Motifs

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Gene-Specific H1 Eviction through a Transcriptional Activator→p300→NAP1→H1 Pathway

(2019) Miho Shimada et al.   MOLECULAR CELL

Chromatin structures condensed by linker histones

(2019) Bing-Rui Zhou et al.   Essays in Biochemistry

Atomic resolution cryo-EM structure of a native-like CENP-A nucleosome aided by an antibody fragment

(2019) Bing-Rui Zhou et al.   Nature Communications

Real-time cryo-electron microscopy data preprocessing with Warp

(2019) Dimitry Tegunov et al.   NATURE METHODS

Cryo-EM Structures of Centromeric Tri-nucleosomes Containing a Central CENP-A Nucleosome

(2019) Yoshimasa Takizawa et al.   STRUCTURE

Revisit of Reconstituted 30-Nm Nucleosome Arrays Reveals an Ensemble of Dynamic Structures

(2018) Bing-Rui Zhou et al.   JOURNAL OF MOLECULAR BIOLOGY

Cryo-EM of nucleosome core particle interactions in trans

(2018) Silvija Bilokapic et al.   Scientific Reports

The in situ structures of mono-, di-, and trinucleosomes in human heterochromatin

(2018) Shujun Cai et al.   MOLECULAR BIOLOGY OF THE CELL

Principles of nucleosome organization revealed by single-cell micrococcal nuclease sequencing

(2018) Binbin Lai et al.   NATURE

Genome-wide measurement of local nucleosome array regularity and spacing by nanopore sequencing

(2018) Sandro Baldi et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

A Robust Method for the Purification and Characterization of Recombinant Human Histone H1 Variants

(2018) Adewola Osunsade et al.   BIOCHEMISTRY

Structure of an H1-Bound 6-Nucleosome Array Reveals an Untwisted Two-Start Chromatin Fiber Conformation

(2018) Isabel Garcia-Saez et al.   MOLECULAR CELL

New tools for automated high-resolution cryo-EM structure determination in RELION-3

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Capturing Structural Heterogeneity in Chromatin Fibers

(2017) Babatunde Ekundayo et al.   JOURNAL OF MOLECULAR BIOLOGY

Structure and Dynamics of a 197 bp Nucleosome in Complex with Linker Histone H1

(2017) Jan Bednar et al.   MOLECULAR CELL

cryoSPARC: algorithms for rapid unsupervised cryo-EM structure determination

(2017) Ali Punjani et al.   NATURE METHODS

Addressing preferred specimen orientation in single-particle cryo-EM through tilting

(2017) Yong Zi Tan et al.   NATURE METHODS

Understanding nucleosome dynamics and their links to gene expression and DNA replication

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Emerging roles of linker histones in regulating chromatin structure and function

(2017) Dmitry V. Fyodorov et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

ChromEMT: Visualizing 3D chromatin structure and compaction in interphase and mitotic cells

(2017) Horng D. Ou et al.   SCIENCE

Genomic Nucleosome Organization Reconstituted with Pure Proteins

(2016) Nils Krietenstein et al.   CELL

The Flexible Ends of CENP-A Nucleosome Are Required for Mitotic Fidelity

(2016) Yohan Roulland et al.   MOLECULAR CELL

Variable chromatin structure revealed by in situ spatially correlated DNA cleavage mapping

(2016) Viviana I. Risca et al.   NATURE

The ISW1 and CHD1 ATP-dependent chromatin remodelers compete to set nucleosome spacingin vivo

(2016) Josefina Ocampo et al.   NUCLEIC ACIDS RESEARCH

Chromatin Fibers Are Formed by Heterogeneous Groups of Nucleosomes In Vivo

(2015) Maria Aurelia Ricci et al.   CELL

Structural Mechanisms of Nucleosome Recognition by Linker Histones

(2015) Bing-Rui Zhou et al.   MOLECULAR CELL

Histone H1-mediated epigenetic regulation controls germline stem cell self-renewal by modulating H4K16 acetylation

(2015) Jin Sun et al.   Nature Communications

Cryo-EM Study of the Chromatin Fiber Reveals a Double Helix Twisted by Tetranucleosomal Units

(2014) F. Song et al.   SCIENCE

H1 linker histone promotes epigenetic silencing by regulating both DNA methylation and histone H3 methylation

(2013) S.-M. Yang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Genomic Landscape of the Somatic Linker Histone Subtypes H1.1 to H1.5 in Human Cells

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A dual role of linker histone H1.4 Lys 34 acetylation in transcriptional activation

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RELION: Implementation of a Bayesian approach to cryo-EM structure determination

(2012) Sjors H.W. Scheres   JOURNAL OF STRUCTURAL BIOLOGY

Protein Kinase A-mediated Serine 35 Phosphorylation Dissociates Histone H1.4 from Mitotic Chromosome

(2011) Chi-Shuen Chu et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Determinants of nucleosome organization in primary human cells

(2011) Anton Valouev et al.   NATURE

Structure and mechanism of the chromatin remodelling factor ISW1a

(2011) Kazuhiro Yamada et al.   NATURE

PHENIX: a comprehensive Python-based system for macromolecular structure solution

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MolProbity: all-atom structure validation for macromolecular crystallography

(2009) Vincent B. Chen et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

The H4 Tail Domain Participates in Intra- and Internucleosome Interactions with Protein and DNA during Folding and Oligomerization of Nucleosome Arrays

(2008) P.-Y. Kan et al.   MOLECULAR AND CELLULAR BIOLOGY

Reciprocal Binding of PARP-1 and Histone H1 at Promoters Specifies Transcriptional Outcomes

(2008) R. Krishnakumar et al.   SCIENCE