Transcriptional coupling of distant regulatory genes in living embryos
Published 2022 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Transcriptional coupling of distant regulatory genes in living embryos
Authors
Keywords
-
Journal
NATURE
Volume 605, Issue 7911, Pages 754-760
Publisher
Springer Science and Business Media LLC
Online
2022-05-05
DOI
10.1038/s41586-022-04680-7
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Genome organization controls transcriptional dynamics during development
- (2022) Philippe J. Batut et al. SCIENCE
- Cis-regulatory chromatin loops arise before TADs and gene activation, and are independent of cell fate during early Drosophila development
- (2021) Sergio Martin Espinola et al. NATURE GENETICS
- Independence of chromatin conformation and gene regulation during Drosophila dorsoventral patterning
- (2021) Elizabeth Ing-Simmons et al. NATURE GENETICS
- GAF is essential for zygotic genome activation and chromatin accessibility in the early Drosophila embryo
- (2021) Marissa M Gaskill et al. eLife
- Orphan CpG islands amplify poised enhancer regulatory activity and determine target gene responsiveness
- (2021) Tomas Pachano et al. NATURE GENETICS
- Analysis of Hi-C data using SIP effectively identifies loops in organisms from C. elegans to mammals
- (2020) M Jordan Rowley et al. GENOME RESEARCH
- Resolving the 3D Landscape of Transcription-Linked Mammalian Chromatin Folding
- (2020) Tsung-Han S. Hsieh et al. MOLECULAR CELL
- Ultrastructural Details of Mammalian Chromosome Architecture
- (2020) Nils Krietenstein et al. MOLECULAR CELL
- Single-gene imaging links genome topology, promoter–enhancer communication and transcription control
- (2020) Jieru Li et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Pioneer-like factor GAF cooperates with PBAP (SWI/SNF) and NURF (ISWI) to regulate transcription
- (2020) Julius Judd et al. GENES & DEVELOPMENT
- Pairing of segmentation clock genes drives robust pattern formation
- (2020) Oriana Q. H. Zinani et al. NATURE
- FlyBase: updates to the Drosophila melanogaster knowledge base
- (2020) Aoife Larkin et al. NUCLEIC ACIDS RESEARCH
- Cooler: scalable storage for Hi-C data and other genomically labeled arrays
- (2019) Nezar Abdennur et al. BIOINFORMATICS
- The selector genes midline and H15 control ventral leg pattern by both inhibiting Dpp signaling and specifying ventral fate
- (2019) Pia C. Svendsen et al. DEVELOPMENTAL BIOLOGY
- Multi-enhancer transcriptional hubs confer phenotypic robustness
- (2019) Albert Tsai et al. eLife
- Decreased Enhancer-Promoter Proximity Accompanying Enhancer Activation
- (2019) Nezha S. Benabdallah et al. MOLECULAR CELL
- KLF4 is involved in the organization and regulation of pluripotency-associated three-dimensional enhancer networks
- (2019) Dafne Campigli Di Giammartino et al. NATURE CELL BIOLOGY
- A compendium of promoter-centered long-range chromatin interactions in the human genome
- (2019) Inkyung Jung et al. NATURE GENETICS
- Alliance of Genome Resources Portal: unified model organism research platform
- (2019) et al. NUCLEIC ACIDS RESEARCH
- Visualization of Transvection in Living Drosophila Embryos
- (2018) Bomyi Lim et al. MOLECULAR CELL
- Polycomb-Dependent Chromatin Looping Contributes to Gene Silencing during Drosophila Development
- (2018) Yuki Ogiyama et al. MOLECULAR CELL
- Enhancer hubs and loop collisions identified from single-allele topologies
- (2018) Amin Allahyar et al. NATURE GENETICS
- The cis-regulatory dynamics of embryonic development at single-cell resolution
- (2018) Darren A. Cusanovich et al. NATURE
- Dynamic interplay between enhancer–promoter topology and gene activity
- (2018) Hongtao Chen et al. NATURE GENETICS
- The bithorax complex iab-7 Polycomb response element has a novel role in the functioning of the Fab-7 chromatin boundary
- (2018) Olga Kyrchanova et al. PLoS Genetics
- Dynamic multifactor hubs interact transiently with sites of active transcription in Drosophila embryos
- (2018) Mustafa Mir et al. eLife
- Uncoupling neurogenic gene networks in the Drosophila embryo
- (2017) William A. Rogers et al. GENES & DEVELOPMENT
- Genome-wide characterization of mammalian promoters with distal enhancer functions
- (2017) Lan T M Dao et al. NATURE GENETICS
- A tiling-deletion-based genetic screen for cis-regulatory element identification in mammalian cells
- (2017) Yarui Diao et al. NATURE METHODS
- Polycomb-mediated chromatin loops revealed by a subkilobase-resolution chromatin interaction map
- (2017) Kyle P. Eagen et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Nuclear microenvironments modulate transcription from low-affinity enhancers
- (2017) Albert Tsai et al. eLife
- The Heidelberg Screen for Pattern Mutants of Drosophila: A Personal Account
- (2016) Eric Wieschaus et al. Annual Review of Cell and Developmental Biology
- Enhancer Control of Transcriptional Bursting
- (2016) Takashi Fukaya et al. CELL
- Ever-Changing Landscapes: Transcriptional Enhancers in Development and Evolution
- (2016) Hannah K. Long et al. CELL
- Diverse and pervasive subcellular distributions for both coding and long noncoding RNAs
- (2016) Ronit Wilk et al. GENES & DEVELOPMENT
- Drosophilapoised enhancers are generated during tissue patterning with the help of repression
- (2016) Nina Koenecke et al. GENOME RESEARCH
- Combgap contributes to recruitment of Polycomb group proteins inDrosophila
- (2016) Payal Ray et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Formation of a Polycomb-Domain in the Absence of Strong Polycomb Response Elements
- (2016) Sandip De et al. PLoS Genetics
- Enhancer additivity and non-additivity are determined by enhancer strength in the Drosophila embryo
- (2015) Jacques P Bothma et al. eLife
- The expression of the T-box selector gene midline in the leg imaginal disc is controlled by both transcriptional regulation and cell lineage
- (2015) P. C. Svendsen et al. Biology Open
- Co-regulation of invected and engrailed by a complex array of regulatory sequences in Drosophila
- (2014) Yuzhong Cheng et al. DEVELOPMENTAL BIOLOGY
- Enhancer loops appear stable during development and are associated with paused polymerase
- (2014) Yad Ghavi-Helm et al. NATURE
- Genome-scale functional characterization of Drosophila developmental enhancers in vivo
- (2014) Evgeny Z. Kvon et al. NATURE
- Insulator function and topological domain border strength scale with architectural protein occupancy
- (2014) Kevin Van Bortle et al. GENOME BIOLOGY
- Chromosomal Contact Permits Transcription between Coregulated Genes
- (2013) Stephanie Fanucchi et al. CELL
- Quantitative Imaging of Transcription in Living Drosophila Embryos Links Polymerase Activity to Patterning
- (2013) Hernan G. Garcia et al. CURRENT BIOLOGY
- The CLAMP protein links the MSL complex to the X chromosome during Drosophila dosage compensation
- (2013) M. M. L. Soruco et al. GENES & DEVELOPMENT
- Accurate measurements of dynamics and reproducibility in small genetic networks
- (2013) J. O. Dubuis et al. Molecular Systems Biology
- Optimized gene editing technology for Drosophila melanogaster using germ line-specific Cas9
- (2013) X. Ren et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Drosophila Distal-less and Rotund Bind a Single Enhancer Ensuring Reliable and Robust bric-a-brac2 Expression in Distinct Limb Morphogenetic Fields
- (2013) Aissette Baanannou et al. PLoS Genetics
- Spatial expression of transcription factors in Drosophila embryonic organ development
- (2013) Ann S Hammonds et al. GENOME BIOLOGY
- Extensive Promoter-Centered Chromatin Interactions Provide a Topological Basis for Transcription Regulation
- (2012) Guoliang Li et al. CELL
- High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression
- (2012) P. Batut et al. GENOME RESEARCH
- The long-range interaction landscape of gene promoters
- (2012) Amartya Sanyal et al. NATURE
- A Regulatory Archipelago Controls Hox Genes Transcription in Digits
- (2011) Thomas Montavon et al. CELL
- How to make stripes: deciphering the transition from non-periodic to periodic patterns in Drosophila segmentation
- (2011) M. D. Schroeder et al. DEVELOPMENT
- Regulation of Chromatin Organization and Inducible Gene Expression by a Drosophila Insulator
- (2011) Ashley M. Wood et al. MOLECULAR CELL
- Multiple enhancers ensure precision of gap gene-expression patterns in the Drosophila embryo
- (2011) M. W. Perry et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Zelda Binding in the Early Drosophila melanogaster Embryo Marks Regions Subsequently Activated at the Maternal-to-Zygotic Transition
- (2011) Melissa M. Harrison et al. PLoS Genetics
- Non-Redundant Selector and Growth-Promoting Functions of Two Sister Genes, buttonhead and Sp1, in Drosophila Leg Development
- (2010) Carlos Estella et al. PLoS Genetics
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- Preferential associations between co-regulated genes reveal a transcriptional interactome in erythroid cells
- (2009) Stefan Schoenfelder et al. NATURE GENETICS
- Conserved Role of the Vsx Genes Supports a Monophyletic Origin for Bilaterian Visual Systems
- (2008) Ted Erclik et al. CURRENT BIOLOGY
- Coexpression, coregulation, and cofunctionality of neighboring genes in eukaryotic genomes
- (2007) Pawel Michalak GENOMICS
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started