African climate and geomorphology drive evolution and ghost introgression in sable antelope

Quantitative estimates of glacial refugia for chimpanzees ( Pan troglodytes ) since the Last Interglacial (120,000 BP)

(2021) Christopher D. Barratt et al.   AMERICAN JOURNAL OF PRIMATOLOGY

Evolutionary history of the roan antelope across its African range

(2021) Margarida Gonçalves et al.   JOURNAL OF BIOGEOGRAPHY

Pleistocene origins, western ghost lineages, and the emerging phylogeographic history of the red wolf and coyote

(2021) Benjamin N. Sacks et al.   MOLECULAR ECOLOGY

Recovering signals of ghost archaic introgression in African populations

(2020) Arun Durvasula et al.   Science Advances

Ghost Introgression: Spooky Gene Flow in the Distant Past

(2020) Jente Ottenburghs   BIOESSAYS

Tectonics, climate and the diversification of the tropical African terrestrial flora and fauna

(2020) Thomas L.P. Couvreur et al.   BIOLOGICAL REVIEWS

Mitochondrial Genomics Reveals Shared Phylogeographic Patterns and Demographic History among Three Periodical Cicada Species Groups

(2019) Zhenyong Du et al.   MOLECULAR BIOLOGY AND EVOLUTION

Ancient admixture from an extinct ape lineage into bonobos

(2019) Martin Kuhlwilm et al.   Nature Ecology & Evolution

‘Ghost introgression’ as a cause of deep mitochondrial divergence in a bird species complex

(2019) Dezhi Zhang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Global glacier dynamics during 100 ka Pleistocene glacial cycles

(2018) Philip D. Hughes et al.   QUATERNARY RESEARCH

Whole mitochondrial genome capture from faecal samples and museum-preserved specimens

(2017) Tom van der Valk et al.   Molecular Ecology Resources

Pleistocene population expansions of shade-tolerant trees indicate fragmentation of the African rainforest during the Ice Ages

(2017) Rosalía Piñeiro et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Phylogenetic position of the extinct blue antelope, Hippotragus leucophaeus (Pallas, 1766) (Bovidae: Hippotraginae), based on complete mitochondrial genomes

(2017) GonÇalo Espregueira Themudo et al.   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Comparison of whole mitochondrial genome sequences of northern and southern white rhinoceroses (Ceratotherium simum): the conservation consequences of species definitions

(2016) Eric H. Harley et al.   CONSERVATION GENETICS

Hybridization following population collapse in a critically endangered antelope

(2016) Pedro Vaz Pinto et al.   Scientific Reports

Environmental variation and rivers govern the structure of chimpanzee genetic diversity in a biodiversity hotspot

(2015) Matthew W Mitchell et al.   BMC EVOLUTIONARY BIOLOGY

First estimates of genetic diversity for the highly endangered giant sable antelope using a set of 57 microsatellites

(2015) Pedro Vaz Pinto et al.   EUROPEAN JOURNAL OF WILDLIFE RESEARCH

Mitogenomic Meta-Analysis Identifies Two Phases of Migration in the History of Eastern Eurasian Sheep

(2015) Feng-Hua Lv et al.   MOLECULAR BIOLOGY AND EVOLUTION

Shotgun Mitogenomics Provides a Reference Phylogenetic Framework and Timescale for Living Xenarthrans

(2015) Gillian C. Gibb et al.   MOLECULAR BIOLOGY AND EVOLUTION

A mitochondrial phylogeographic scenario for the most widespread African rodent,Mastomys natalensis

(2013) Paolo Colangelo et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

A multi-calibrated mitochondrial phylogeny of extant Bovidae (Artiodactyla, Ruminantia) and the importance of the fossil record to systematics

(2013) Faysal Bibi   BMC EVOLUTIONARY BIOLOGY

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

DNA analysis of an early modern human from Tianyuan Cave, China

(2013) Q. Fu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments

(2013) J. Dabney et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

THE EVOLUTION AND AGES OF MAKGADIKGADI PALAEO-LAKES: CONSILIENT EVIDENCE FROM KALAHARI DRAINAGE EVOLUTION SOUTH-CENTRAL AFRICA

(2013) A. E. MOORE et al.   SOUTH AFRICAN JOURNAL OF GEOLOGY

Baboon phylogeny as inferred from complete mitochondrial genomes

(2012) Dietmar Zinner et al.   AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY

Length and GC-biases during sequencing library amplification: A comparison of various polymerase-buffer systems with ancient and modern DNA sequencing libraries

(2012) Jesse Dabney et al.   BIOTECHNIQUES

Geodynamic significance of the TRM segment in the East African Rift (W-Tanzania): Active tectonics and paleostress in the Ufipa plateau and Rukwa basin

(2012) D. Delvaux et al.   JOURNAL OF STRUCTURAL GEOLOGY

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

Mitogenomic sequences better resolve stock structure of southern Greater Caribbean green turtle rookeries

(2012) BRIAN M. SHAMBLIN et al.   MOLECULAR ECOLOGY

Comparative phylogeography of African savannah ungulates1

(2012) E. D. LORENZEN et al.   MOLECULAR ECOLOGY

Cape buffalo mitogenomics reveals a Holocene shift in the African human-megafauna dynamics

(2012) RASMUS HELLER et al.   MOLECULAR ECOLOGY

The biogeography of mitochondrial and nuclear discordance in animals

(2012) DAVID P. L. TOEWS et al.   MOLECULAR ECOLOGY

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

Nuclear Genomic Sequences Reveal that Polar Bears Are an Old and Distinct Bear Lineage

(2012) F. Hailer et al.   SCIENCE

Pattern and timing of diversification of Cetartiodactyla (Mammalia, Laurasiatheria), as revealed by a comprehensive analysis of mitochondrial genomes

(2011) Alexandre Hassanin et al.   COMPTES RENDUS BIOLOGIES

Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform

(2011) Martin Kircher et al.   NUCLEIC ACIDS RESEARCH

Out of the Pacific and Back Again: Insights into the Matrilineal History of Pacific Killer Whale Ecotypes

(2011) Andrew D. Foote et al.   PLoS One

Cryptic Diversity of African Tigerfish (Genus Hydrocynus) Reveals Palaeogeographic Signatures of Linked Neogene Geotectonic Events

(2011) Sarah A. M. Goodier et al.   PLoS One

Orbital scale vegetation change in Africa

(2011) Lydie Dupont   QUATERNARY SCIENCE REVIEWS

phangorn: phylogenetic analysis in R

(2010) Klaus Peter Schliep   BIOINFORMATICS

Cladogenesis and endemism in Tanzanian mole-rats, genus Fukomys: (Rodentia Bathyergidae): a role for tectonics?

(2010) CHRIS G. FAULKES et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

The roles of rivers and Pleistocene refugia in shaping genetic diversity in Praomys misonnei in tropical Africa

(2010) V. Nicolas et al.   JOURNAL OF BIOGEOGRAPHY

Vegetation response to glacial–interglacial climate variability near Lake Malawi in the southern African tropics

(2010) Kristina R.M. Beuning et al.   PALAEOGEOGRAPHY PALAEOCLIMATOLOGY PALAEOECOLOGY

Multiplexed DNA Sequence Capture of Mitochondrial Genomes Using PCR Products

(2010) Tomislav Maricic et al.   PLoS One

Human evolution in a variable environment: the amplifier lakes of Eastern Africa

(2010) Martin H. Trauth et al.   QUATERNARY SCIENCE REVIEWS

Western Zambian sable: Are they a Geographic Extension of the Giant sable Antelope?

(2010) Bettine Jansen van Vuuren et al.   SOUTH AFRICAN JOURNAL OF WILDLIFE RESEARCH

Genetic Consequences of Range Expansions

(2009) Laurent Excoffier et al.   Annual Review of Ecology Evolution and Systematics

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS

Speciation mirrors geomorphology and palaeoclimatic history in African laminate-toothed rats (Muridae: Otomyini) of the Otomys denti and Otomys lacustris species-complexes in the ‘Montane Circle’ of East Africa

(2009) PETER J. TAYLOR et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Direct multiplex sequencing (DMPS)--a novel method for targeted high-throughput sequencing of ancient and highly degraded DNA

(2009) M. Stiller et al.   GENOME RESEARCH

A long-standing Pleistocene refugium in southern Africa and a mosaic of refugia in East Africa: insights from mtDNA and the common eland antelope

(2009) Eline D. Lorenzen et al.   JOURNAL OF BIOGEOGRAPHY

Mega-Lake in the Kalahari: A Late Pleistocene record of the Palaeolake Makgadikgadi system

(2009) Sallie L. Burrough et al.   QUATERNARY SCIENCE REVIEWS

Southern African topography and erosion history: plumes or plate tectonics?

(2009) Andy Moore et al.   TERRA NOVA

Gene flow and species delimitation

(2009) Rémy J. Petit et al.   TRENDS IN ECOLOGY & EVOLUTION

Mitochondrial genomes of extinct aurochs survive in domestic cattle

(2008) Alessandro Achilli et al.   CURRENT BIOLOGY

THE HIDDEN SIDE OF INVASIONS: MASSIVE INTROGRESSION BY LOCAL GENES

(2008) Mathias Currat et al.   EVOLUTION

Trends, rhythms and events in Plio-Pleistocene African climate

(2008) Martin H. Trauth et al.   QUATERNARY SCIENCE REVIEWS