Mitochondrial Genomics Reveals Shared Phylogeographic Patterns and Demographic History among Three Periodical Cicada Species Groups

Mitogenome phylogeographic analysis of a planktonic crustacean

(2018) Peter D. Fields et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

(2018) Andrew Rambaut et al.   SYSTEMATIC BIOLOGY

Cicada fossils (Cicadoidea: Tettigarctidae and Cicadidae) with a review of the named fossilised Cicadidae

(2018) M. S. MOULDS   ZOOTAXA

The periodical cicada four-year acceleration hypothesis revisited and the polyphyletic nature of Brood V, including an updated crowd-source enhanced map (Hemiptera: Cicadidae: Magicicada)

(2018) John R. Cooley et al.   PeerJ

Multimodal Life-Cycle Variation in 13- and 17-Year Periodical Cicadas (Hemiptera: Cicadidae: Magicicada)

(2017) David C. Marshall et al.   JOURNAL OF THE KANSAS ENTOMOLOGICAL SOCIETY

Large Variation in the Ratio of Mitochondrial to Nuclear Mutation Rate across Animals: Implications for Genetic Diversity and the Use of Mitochondrial DNA as a Molecular Marker

(2017) Remi Allio et al.   MOLECULAR BIOLOGY AND EVOLUTION

The role of allochrony in speciation

(2017) Rebecca S. Taylor et al.   MOLECULAR ECOLOGY

Parallel Mitogenome Sequencing Alleviates Random Rooting Effect in Phylogeography

(2016) Shotaro Hirase et al.   Genome Biology and Evolution

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genomic divergence and lack of introgressive hybridization between two 13-year periodical cicadas support life cycle switching in the face of climate change

(2016) Takuya Koyama et al.   MOLECULAR ECOLOGY

W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis

(2016) Jana Trifinopoulos et al.   NUCLEIC ACIDS RESEARCH

Mitochondrial metagenomics: letting the genes out of the bottle

(2016) Alex Crampton-Platt et al.   GigaScience

Extended flowering intervals of bamboos evolved by discrete multiplication

(2015) Carl Veller et al.   ECOLOGY LETTERS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Bulk De Novo Mitogenome Assembly from Pooled Total DNA Elucidates the Phylogeny of Weevils (Coleoptera: Curculionoidea)

(2014) Conrad P.D.T. Gillett et al.   MOLECULAR BIOLOGY AND EVOLUTION

Multiplex sequencing of pooled mitochondrial genomes—a crucial step toward biodiversity analysis using mito-metagenomics

(2014) Min Tang et al.   NUCLEIC ACIDS RESEARCH

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

(2014) Remco Bouckaert et al.   PLoS Computational Biology

The Evolutionary History of Plasmodium vivax as Inferred from Mitochondrial Genomes: Parasite Genetic Diversity in the Americas

(2013) Jesse E. Taylor et al.   MOLECULAR BIOLOGY AND EVOLUTION

PAMLX: A Graphical User Interface for PAML

(2013) B. Xu et al.   MOLECULAR BIOLOGY AND EVOLUTION

Ultrafast Approximation for Phylogenetic Bootstrap

(2013) B. Q. Minh et al.   MOLECULAR BIOLOGY AND EVOLUTION

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Next-generation sequencing and phylogenetic signal of complete mitochondrial genomes for resolving the evolutionary history of leaf-nosed bats (Phyllostomidae)

(2013) Fidel Botero-Castro et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Independent divergence of 13- and 17-y life cycles among three periodical cicada lineages

(2013) T. Sota et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

(2012) Y. Peng et al.   BIOINFORMATICS

PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses

(2012) R. Lanfear et al.   MOLECULAR BIOLOGY AND EVOLUTION

Mitochondrial genomes reveal the global phylogeography and dispersal routes of the migratory locust

(2012) CHUAN MA et al.   MOLECULAR ECOLOGY

MITOS: Improved de novo metazoan mitochondrial genome annotation

(2012) Matthias Bernt et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Developmental Plasticity of Life-Cycle Length in Thirteen-Year Periodical Cicadas (Hemiptera: Cicadidae)

(2011) David C. Marshall et al.   ANNALS OF THE ENTOMOLOGICAL SOCIETY OF AMERICA

Complete mitochondrial genome phylogeographic analysis of killer whales (Orcinus orca) indicates multiple species

(2010) P. A. Morin et al.   GENOME RESEARCH

Evolutionary History of Chimpanzees Inferred from Complete Mitochondrial Genomes

(2010) A. Bjork et al.   MOLECULAR BIOLOGY AND EVOLUTION

Insights into the Demographic History of African Pygmies from Complete Mitochondrial Genomes

(2010) C. Batini et al.   MOLECULAR BIOLOGY AND EVOLUTION

Revisiting the Insect Mitochondrial Molecular Clock: The Mid-Aegean Trench Calibration

(2010) A. Papadopoulou et al.   MOLECULAR BIOLOGY AND EVOLUTION

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

(2010) LAURENT EXCOFFIER et al.   Molecular Ecology Resources

TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations

(2010) Federico Abascal et al.   NUCLEIC ACIDS RESEARCH

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS

Allochronic speciation, secondary contact, and reproductive character displacement in periodical cicadas (Hemiptera: Magicicada spp.): genetic, morphological, and behavioural evidence

(2003) John R. Cooley et al.   MOLECULAR ECOLOGY