PDBx/mmCIF Ecosystem: Foundational Semantic Tools for Structural Biology

Mol* Viewer: modern web app for 3D visualization and analysis of large biomolecular structures

(2021) David Sehnal et al.   NUCLEIC ACIDS RESEARCH

Highly accurate protein structure prediction with AlphaFold

(2021) John Jumper et al.   NATURE

RCSB Protein Data Bank: Celebrating 50 years of the PDB with new tools for understanding and visualizing biological macromolecules in 3D

(2021) Stephen K. Burley et al.   PROTEIN SCIENCE

Protein Data Bank Japan: Celebrating our 20th anniversary during a global pandemic as the Asian hub of three dimensional macromolecular structural data

(2021) Gert‐Jan Bekker et al.   PROTEIN SCIENCE

BinaryCIF and CIFTools—Lightweight, efficient and extensible macromolecular data management

(2020) David Sehnal et al.   PLoS Computational Biology

RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental biology, biomedicine, biotechnology, bioengineering and energy sciences

(2020) Stephen K Burley et al.   NUCLEIC ACIDS RESEARCH

BioJava 5: A community driven open-source bioinformatics library

(2019) Aleix Lafita et al.   PLoS Computational Biology

Announcing mandatory submission of PDBx/mmCIF format files for crystallographic depositions to the Protein Data Bank (PDB)

(2019) Paul D. Adams et al.   Acta Crystallographica Section D-Structural Biology

Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix

(2019) Dorothee Liebschner et al.   Acta Crystallographica Section D-Structural Biology

Development of a Prototype System for Archiving Integrative/Hybrid Structure Models of Biological Macromolecules

(2018) Brinda Vallat et al.   STRUCTURE

DIALS: implementation and evaluation of a new integration package

(2018) Graeme Winter et al.   Acta Crystallographica Section D-Structural Biology

Protein Data Bank: the single global archive for 3D macromolecular structure data

(2018) et al.   NUCLEIC ACIDS RESEARCH

OneDep: Unified wwPDB System for Deposition, Biocuration, and Validation of Macromolecular Structures in the PDB Archive

(2017) Jasmine Y. Young et al.   STRUCTURE

MMTF—An efficient file format for the transmission, visualization, and analysis of macromolecular structures

(2017) Anthony R. Bradley et al.   PLoS Computational Biology

Biological roles of glycans

(2016) Ajit Varki   GLYCOBIOLOGY

The 3.8 A resolution cryo-EM structure of Zika virus

(2016) D. Sirohi et al.   SCIENCE

COD::CIF::Parser: an error-correcting CIF parser for the Perl language

(2016) Andrius Merkys et al.   JOURNAL OF APPLIED CRYSTALLOGRAPHY

The FAIR Guiding Principles for scientific data management and stewardship

(2016) Mark D. Wilkinson et al.   Scientific Data

EMDataBank unified data resource for 3DEM

(2015) Catherine L. Lawson et al.   NUCLEIC ACIDS RESEARCH

The chemical component dictionary: complete descriptions of constituent molecules in experimentally determined 3D macromolecules in the Protein Data Bank

(2014) John D. Westbrook et al.   BIOINFORMATICS

The Protein Data Bank archive as an open data resource

(2014) Helen M. Berman et al.   JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN

SASBDB, a repository for biological small-angle scattering data

(2014) Erica Valentini et al.   NUCLEIC ACIDS RESEARCH

The Resolution Revolution

(2014) W. Kuhlbrandt   SCIENCE

Improving the representation of peptide-like inhibitor and antibiotic molecules in the Protein Data Bank

(2013) Shuchismita Dutta et al.   BIOPOLYMERS

Mature HIV-1 capsid structure by cryo-electron microscopy and all-atom molecular dynamics

(2013) Gongpu Zhao et al.   NATURE

PDB_REDO: constructive validation, more than just looking for errors

(2012) Robbie P. Joosten et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Overview of theCCP4 suite and current developments

(2011) Martyn D. Winn et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Integration, scaling, space-group assignment and post-refinement

(2010) Wolfgang Kabsch   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

XDS

(2010) Wolfgang Kabsch   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Features and development ofCoot

(2010) P. Emsley et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Structure validation in chemical crystallography

(2009) Anthony L. Spek   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Biopython: freely available Python tools for computational molecular biology and bioinformatics

(2009) P. J. A. Cock et al.   BIOINFORMATICS

Outcome of a Workshop on Applications of Protein Models in Biomedical Research

(2009) Torsten Schwede et al.   STRUCTURE

VCIF2: extended CIF validation software

(2008) Georgi Todorov et al.   JOURNAL OF APPLIED CRYSTALLOGRAPHY