标题
PDBx/mmCIF Ecosystem: Foundational Semantic Tools for Structural Biology
作者
关键词
-
出版物
JOURNAL OF MOLECULAR BIOLOGY
Volume 434, Issue 11, Pages 167599
出版商
Elsevier BV
发表日期
2022-04-21
DOI
10.1016/j.jmb.2022.167599
参考文献
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注意：仅列出部分参考文献，下载原文获取全部文献信息。- Mol* Viewer: modern web app for 3D visualization and analysis of large biomolecular structures
- (2021) David Sehnal et al. NUCLEIC ACIDS RESEARCH
- Highly accurate protein structure prediction with AlphaFold
- (2021) John Jumper et al. NATURE
- RCSB Protein Data Bank: Celebrating 50 years of the PDB with new tools for understanding and visualizing biological macromolecules in 3D
- (2021) Stephen K. Burley et al. PROTEIN SCIENCE
- Protein Data Bank Japan: Celebrating our 20th anniversary during a global pandemic as the Asian hub of three dimensional macromolecular structural data
- (2021) Gert‐Jan Bekker et al. PROTEIN SCIENCE
- BinaryCIF and CIFTools—Lightweight, efficient and extensible macromolecular data management
- (2020) David Sehnal et al. PLoS Computational Biology
- RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental biology, biomedicine, biotechnology, bioengineering and energy sciences
- (2020) Stephen K Burley et al. NUCLEIC ACIDS RESEARCH
- BioJava 5: A community driven open-source bioinformatics library
- (2019) Aleix Lafita et al. PLoS Computational Biology
- Announcing mandatory submission of PDBx/mmCIF format files for crystallographic depositions to the Protein Data Bank (PDB)
- (2019) Paul D. Adams et al. Acta Crystallographica Section D-Structural Biology
- Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix
- (2019) Dorothee Liebschner et al. Acta Crystallographica Section D-Structural Biology
- Development of a Prototype System for Archiving Integrative/Hybrid Structure Models of Biological Macromolecules
- (2018) Brinda Vallat et al. STRUCTURE
- DIALS: implementation and evaluation of a new integration package
- (2018) Graeme Winter et al. Acta Crystallographica Section D-Structural Biology
- Protein Data Bank: the single global archive for 3D macromolecular structure data
- (2018) et al. NUCLEIC ACIDS RESEARCH
- OneDep: Unified wwPDB System for Deposition, Biocuration, and Validation of Macromolecular Structures in the PDB Archive
- (2017) Jasmine Y. Young et al. STRUCTURE
- MMTF—An efficient file format for the transmission, visualization, and analysis of macromolecular structures
- (2017) Anthony R. Bradley et al. PLoS Computational Biology
- Biological roles of glycans
- (2016) Ajit Varki GLYCOBIOLOGY
- The 3.8 A resolution cryo-EM structure of Zika virus
- (2016) D. Sirohi et al. SCIENCE
- COD::CIF::Parser: an error-correcting CIF parser for the Perl language
- (2016) Andrius Merkys et al. JOURNAL OF APPLIED CRYSTALLOGRAPHY
- The FAIR Guiding Principles for scientific data management and stewardship
- (2016) Mark D. Wilkinson et al. Scientific Data
- EMDataBank unified data resource for 3DEM
- (2015) Catherine L. Lawson et al. NUCLEIC ACIDS RESEARCH
- The chemical component dictionary: complete descriptions of constituent molecules in experimentally determined 3D macromolecules in the Protein Data Bank
- (2014) John D. Westbrook et al. BIOINFORMATICS
- The Protein Data Bank archive as an open data resource
- (2014) Helen M. Berman et al. JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN
- SASBDB, a repository for biological small-angle scattering data
- (2014) Erica Valentini et al. NUCLEIC ACIDS RESEARCH
- The Resolution Revolution
- (2014) W. Kuhlbrandt SCIENCE
- Improving the representation of peptide-like inhibitor and antibiotic molecules in the Protein Data Bank
- (2013) Shuchismita Dutta et al. BIOPOLYMERS
- Mature HIV-1 capsid structure by cryo-electron microscopy and all-atom molecular dynamics
- (2013) Gongpu Zhao et al. NATURE
- PDB_REDO: constructive validation, more than just looking for errors
- (2012) Robbie P. Joosten et al. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
- Overview of theCCP4 suite and current developments
- (2011) Martyn D. Winn et al. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
- Integration, scaling, space-group assignment and post-refinement
- (2010) Wolfgang Kabsch ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
- XDS
- (2010) Wolfgang Kabsch ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
- Features and development ofCoot
- (2010) P. Emsley et al. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
- Structure validation in chemical crystallography
- (2009) Anthony L. Spek ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
- Biopython: freely available Python tools for computational molecular biology and bioinformatics
- (2009) P. J. A. Cock et al. BIOINFORMATICS
- Outcome of a Workshop on Applications of Protein Models in Biomedical Research
- (2009) Torsten Schwede et al. STRUCTURE
- VCIF2: extended CIF validation software
- (2008) Georgi Todorov et al. JOURNAL OF APPLIED CRYSTALLOGRAPHY
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