Global DNA Methylation and mRNA-miRNA Variations Activated by Heat Shock Boost Early Microspore Embryogenesis in Cabbage (Brassica oleracea)

Different MicroRNA Families Involved in Regulating High Temperature Stress Response during Cotton (Gossypium hirsutum L.) Anther Development

(2020) Jin Chen et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

The commitment of barley microspores into embryogenesis correlates with miRNA‐directed regulation of members of the SPL, GRF and HD‐ZIPIII transcription factor families

(2020) Sébastien Bélanger et al.   Plant Direct

Anthocyanin Degrading and Chlorophyll Accumulation Lead to the Formation of Bicolor Leaf in Ornamental Kale

(2019) Jie Ren et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Genome-wide analysis of HSP70 family genes in cabbage (Brassica oleracea var. capitata) reveals their involvement in floral development

(2019) Henan Su et al.   BMC GENOMICS

Last-Generation Genome–Environment Associations Reveal the Genetic Basis of Heat Tolerance in Common Bean (Phaseolus vulgaris L.)

(2019) Felipe López-Hernández et al.   Frontiers in Genetics

miR156-SPL modules regulate induction of somatic embryogenesis in citrus callus

(2018) Jian-Mei Long et al.   JOURNAL OF EXPERIMENTAL BOTANY

Complementary transcriptome and proteome profiling in cabbage buds of a recessive male sterile mutant provides new insights into male reproductive development

(2018) Jialei Ji et al.   Journal of Proteomics

Disrupted Genome Methylation in Response to High Temperature Has Distinct Affects on Microspore Abortion and Anther Indehiscence

(2018) Yizan Ma et al.   PLANT CELL

The role of miRNA in somatic embryogenesis

(2018) Zahid Hameed Siddiqui et al.   GENOMICS

Revealing of MicroRNA Involved Regulatory Gene Networks on Terpenoid Biosynthesis in Camellia sinensis in Different Growing Time Points

(2018) Shiqi Zhao et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Comparative Analysis of Genome Wide DNA Methylation Profiles for the Genic Male Sterile Cabbage Line 01-20S and Its Maintainer Line

(2017) Fengqing Han et al.   Genes

Dynamic Changes of Genome-Wide DNA Methylation during Soybean Seed Development

(2017) Yong-qiang Charles An et al.   Scientific Reports

WALT: fast and accurate read mapping for bisulfite sequencing

(2016) Haifeng Chen et al.   BIOINFORMATICS

Small RNA and degradome profiling reveals miRNA regulation in the seed germination of ancient eudicot Nelumbo nucifera

(2016) Jihong Hu et al.   BMC GENOMICS

MicroRNAs activate gene transcription epigenetically as an enhancer trigger

(2016) Min Xiao et al.   RNA Biology

Global Methylation Patterns and Their Relationship with Gene Expression and Small RNA in Rice Lines with Different Ploidy

(2016) Hong-Yu Zhang et al.   Frontiers in Plant Science

Global DNA methylation variations after short-term heat shock treatment in cultured microspores of Brassica napus cv. Topas

(2016) Jun Li et al.   Scientific Reports

Genome-wide analysis of DNA methylation in photoperiod- and thermo-sensitive male sterile rice Peiai 64S

(2015) Jihong Hu et al.   BMC GENOMICS

MicroRNAs in Control of Plant Development

(2015) Chao Li et al.   JOURNAL OF CELLULAR PHYSIOLOGY

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

(2015) Mihaela Pertea et al.   NATURE BIOTECHNOLOGY

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

High-temperature effect on genes engaged in DNA methylation and affected by DNA methylation in Arabidopsis

(2015) Mladen Naydenov et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Maize miRNA and target regulation in response to hormone depletion and light exposure during somatic embryogenesis

(2015) Elva C. Chávez-Hernández et al.   Frontiers in Plant Science

Divergent DNA methylation patterns associated with gene expression in rice cultivars with contrasting drought and salinity stress response

(2015) Rohini Garg et al.   Scientific Reports

Early markers are present in both embryogenesis pathways from microspores and immature zygotic embryos in cork oak, Quercus suberL

(2014) Héctor Rodríguez-Sanz et al.   BMC PLANT BIOLOGY

Changes in DNA Methylation Levels and Nuclear Distribution Patterns after Microspore Reprogramming to Embryogenesis in Barley

(2014) Ahmed-Abdalla El-Tantawy et al.   CYTOGENETIC AND GENOME RESEARCH

Breeding of cabbage (Brassica oleracea L. var. capitata) with fusarium wilt resistance based on microspore culture and marker-assisted selection

(2014) Hong-hao Lv et al.   EUPHYTICA

Induced and Constitutive DNA Methylation in a Salinity-Tolerant Wheat Introgression Line

(2014) Meng Wang et al.   PLANT AND CELL PHYSIOLOGY

MicroRNA profiling analysis throughout tomato fruit development and ripening reveals potential regulatory role of RIN on microRNAs accumulation

(2014) Chao Gao et al.   PLANT BIOTECHNOLOGY JOURNAL

High-throughput sequencing identification of novel and conserved miRNAs in the Brassica oleracea leaves

(2013) Anna Lukasik et al.   BMC GENOMICS

Small RNA and degradome sequencing reveal complex miRNA regulation during cotton somatic embryogenesis

(2013) Xiyan Yang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Genomewide discovery of DNA polymorphisms in rice cultivars with contrasting drought and salinity stress response and their functional relevance

(2013) Mukesh Jain et al.   PLANT BIOTECHNOLOGY JOURNAL

A Reference Methylome Database and Analysis Pipeline to Facilitate Integrative and Comparative Epigenomics

(2013) Qiang Song et al.   PLoS One

DNA Methylation Dynamics during Sexual Reproduction in Arabidopsis thaliana

(2012) Pauline E. Jullien et al.   CURRENT BIOLOGY

DNA methylation dynamics and MET1a-like gene expression changes during stress-induced pollen reprogramming to embryogenesis

(2012) M.-T. Solis et al.   JOURNAL OF EXPERIMENTAL BOTANY

Functions of DNA methylation: islands, start sites, gene bodies and beyond

(2012) Peter A. Jones   NATURE REVIEWS GENETICS

Effects of pH, MES, arabinogalactan-proteins on microspore cultures in white cabbage

(2012) Su-xia Yuan et al.   PLANT CELL TISSUE AND ORGAN CULTURE

Genome-wide identification of microRNAs in larch and stage-specific modulation of 11 conserved microRNAs and their targets during somatic embryogenesis

(2012) Junhong Zhang et al.   PLANTA

methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles

(2012) Altuna Akalin et al.   GENOME BIOLOGY

Epigenetics in plant development and response to stress

(2011) Gideon Grafi   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Role of miRNAs and siRNAs in biotic and abiotic stress responses of plants

(2011) Basel Khraiwesh et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Regulation and function of DNA methylation in plants and animals

(2011) Xin-Jian He et al.   CELL RESEARCH

psRNATarget: a plant small RNA target analysis server

(2011) Xinbin Dai et al.   NUCLEIC ACIDS RESEARCH

microRNA, seeds, and Darwin?: diverse function of miRNA in seed biology and plant responses to stress

(2010) R. C. Martin et al.   JOURNAL OF EXPERIMENTAL BOTANY

Environmentally induced phenotypes and DNA methylation: how to deal with unpredictable conditions until the next generation and after

(2010) BERNARD ANGERS et al.   MOLECULAR ECOLOGY

Effect of combined cold pretreatment and heat shock on microspore cultures in broccoli

(2010) S. X. Yuan et al.   PLANT BREEDING

Isolated microspore culture techniques and recent progress for haploid and doubled haploid plant production

(2010) A. M. R. Ferrie et al.   PLANT CELL TISSUE AND ORGAN CULTURE

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

Human DNA methylomes at base resolution show widespread epigenomic differences

(2009) Ryan Lister et al.   NATURE

Stress-related variation in antioxidative enzymes activity and cell metabolism efficiency associated with embryogenesis induction in isolated microspore culture of triticale (x Triticosecale Wittm.)

(2009) Iwona Żur et al.   PLANT CELL REPORTS

Analyzing real-time PCR data by the comparative CT method

(2008) Thomas D Schmittgen et al.   Nature Protocols

How microspores transform into haploid embryos: changes associated with embryogenesis induction and microspore-derived embryogenesis

(2008) José M. Seguí-Simarro et al.   PHYSIOLOGIA PLANTARUM