VP-Detector: A 3D multi-scale dense convolutional neural network for macromolecule localization and classification in cryo-electron tomograms

Noise-Transfer2Clean: denoising cryo-EM images based on noise modeling and transfer

(2022) Hongjia Li et al.   BIOINFORMATICS

Macromolecules Structural Classification With a 3D Dilated Dense Network in Cryo-Electron Tomography

(2021) Shan Gao et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Deep learning improves macromolecule identification in 3D cellular cryo-electron tomograms

(2021) Emmanuel Moebel et al.   NATURE METHODS

Template-free detection and classification of membrane-bound complexes in cryo-electron tomograms

(2020) Antonio Martinez-Sanchez et al.   NATURE METHODS

SHREC’20 Benchmark: Classification in cryo-electron tomograms

(2020) Ilja Gubins et al.   COMPUTERS & GRAPHICS-UK

PIXER: an automated particle-selection method based on segmentation using a deep neural network

(2019) Jingrong Zhang et al.   BMC BIOINFORMATICS

Automatic localization and identification of mitochondria in cellular electron cryo-tomography using faster-RCNN

(2019) Ran Li et al.   BMC BIOINFORMATICS

Adversarial domain adaptation for cross data source macromolecule in situ structural classification in cellular electron cryo-tomograms

(2019) Ruogu Lin et al.   BIOINFORMATICS

A complete data processing workflow for cryo-ET and subtomogram averaging

(2019) Muyuan Chen et al.   NATURE METHODS

Improved deep learning-based macromolecules structure classification from electron cryo-tomograms

(2018) Chengqian Che et al.   MACHINE VISION AND APPLICATIONS

New software tools in EMAN2 inspired by EMDatabank map challenge

(2018) James M. Bell et al.   JOURNAL OF STRUCTURAL BIOLOGY

emClarity: software for high-resolution cryo-electron tomography and subtomogram averaging

(2018) Benjamin A. Himes et al.   NATURE METHODS

Subtomogram averaging of COPII assemblies reveals how coat organization dictates membrane shape

(2018) Joshua Hutchings et al.   Nature Communications

Efficient 3D-CTF correction for cryo-electron tomography using NovaCTF improves subtomogram averaging resolution to 3.4 Å

(2017) Beata Turoňová et al.   JOURNAL OF STRUCTURAL BIOLOGY

AuTom: A novel automatic platform for electron tomography reconstruction

(2017) Renmin Han et al.   JOURNAL OF STRUCTURAL BIOLOGY

Dynamo Catalogue : Geometrical tools and data management for particle picking in subtomogram averaging of cryo-electron tomograms

(2017) Daniel Castaño-Díez et al.   JOURNAL OF STRUCTURAL BIOLOGY

Convolutional neural networks for automated annotation of cellular cryo-electron tomograms

(2017) Muyuan Chen et al.   NATURE METHODS

Simulating cryo electron tomograms of crowded cell cytoplasm for assessment of automated particle picking

(2016) Long Pei et al.   BMC BIOINFORMATICS

DeepPicker: A deep learning approach for fully automated particle picking in cryo-EM

(2016) Feng Wang et al.   JOURNAL OF STRUCTURAL BIOLOGY

Resolving macromolecular structures from electron cryo-tomography data using subtomogram averaging in RELION

(2016) Tanmay A M Bharat et al.   Nature Protocols

An atomic model of HIV-1 capsid-SP1 reveals structures regulating assembly and maturation

(2016) Florian K. M. Schur et al.   SCIENCE