emClarity: software for high-resolution cryo-electron tomography and subtomogram averaging

cisTEM, user-friendly software for single-particle image processing

(2018) Timothy Grant et al.   eLife

Efficient 3D-CTF correction for cryo-electron tomography using NovaCTF improves subtomogram averaging resolution to 3.4 Å

(2017) Beata Turoňová et al.   JOURNAL OF STRUCTURAL BIOLOGY

Three-dimensional CTF correction improves the resolution of electron tomograms

(2017) Michael Kunz et al.   JOURNAL OF STRUCTURAL BIOLOGY

Subtomogram analysis using the Volta phase plate

(2017) Maryam Khoshouei et al.   JOURNAL OF STRUCTURAL BIOLOGY

Recurring RNA structural motifs underlie the mechanics of L1 stalk movement

(2017) Srividya Mohan et al.   Nature Communications

Single-protein detection in crowded molecular environments in cryo-EM images

(2017) J Peter Rickgauer et al.   eLife

The Electron Microscopy eXchange (EMX) initiative

(2016) Roberto Marabini et al.   JOURNAL OF STRUCTURAL BIOLOGY

Resolving macromolecular structures from electron cryo-tomography data using subtomogram averaging in RELION

(2016) Tanmay A M Bharat et al.   Nature Protocols

Two distinct trimeric conformations of natively membrane-anchored full-length herpes simplex virus 1 glycoprotein B

(2016) Tzviya Zeev-Ben-Mordehai et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An atomic model of HIV-1 capsid-SP1 reveals structures regulating assembly and maturation

(2016) Florian K. M. Schur et al.   SCIENCE

In vitro protease cleavage and computer simulations reveal the HIV-1 capsid maturation pathway

(2016) Jiying Ning et al.   Nature Communications

Ensemble cryo-EM uncovers inchworm-like translocation of a viral IRES through the ribosome

(2016) Priyanka D Abeyrathne et al.   eLife

A Primer to Single-Particle Cryo-Electron Microscopy

(2015) Yifan Cheng et al.   CELL

Conical Fourier shell correlation applied to electron tomograms

(2015) C.A. Diebolder et al.   JOURNAL OF STRUCTURAL BIOLOGY

CTFFIND4: Fast and accurate defocus estimation from electron micrographs

(2015) Alexis Rohou et al.   JOURNAL OF STRUCTURAL BIOLOGY

Efficient Estimation of Three-Dimensional Covariance and its Application in the Analysis of Heterogeneous Samples in Cryo-Electron Microscopy

(2015) Hstau Y. Liao et al.   STRUCTURE

Advances in Single-Particle Electron Cryomicroscopy Structure Determination applied to Sub-tomogram Averaging

(2015) Tanmay A.M. Bharat et al.   STRUCTURE

CryoEM and computer simulations reveal a novel kinase conformational switch in bacterial chemotaxis signaling

(2015) C Keith Cassidy et al.   eLife

Measuring the optimal exposure for single particle cryo-EM using a 2.6 Å reconstruction of rotavirus VP6

(2015) Timothy Grant et al.   eLife

Regulation of the Mammalian Elongation Cycle by Subunit Rolling: A Eukaryotic-Specific Ribosome Rearrangement

(2014) Tatyana V. Budkevich et al.   CELL

Beam-induced motion correction for sub-megadalton cryo-EM particles

(2014) Sjors HW Scheres   eLife

Cryo-electron tomography: The challenge of doing structural biology in situ

(2013) Vladan Lučić et al.   JOURNAL OF CELL BIOLOGY

Structural insights into the mechanism of translational inhibition by the fungicide sordarin

(2013) Biprashekhar Chakraborty et al.   JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN

Determination of protein structure at 8.5Å resolution using cryo-electron tomography and sub-tomogram averaging

(2013) Florian K.M. Schur et al.   JOURNAL OF STRUCTURAL BIOLOGY

Structures of the human and Drosophila 80S ribosome

(2013) Andreas M. Anger et al.   NATURE

Ribosome structures to near-atomic resolution from thirty thousand cryo-EM particles

(2013) Xiao-chen Bai et al.   eLife

Pushing the resolution limits in cryo electron tomography of biological structures

(2012) CHRISTOPH. A. DIEBOLDER et al.   JOURNAL OF MICROSCOPY

Optimal noise reduction in 3D reconstructions of single particles using a volume-normalized filter

(2012) Charles V. Sindelar et al.   JOURNAL OF STRUCTURAL BIOLOGY

RELION: Implementation of a Bayesian approach to cryo-EM structure determination

(2012) Sjors H.W. Scheres   JOURNAL OF STRUCTURAL BIOLOGY

Outcome of the First Electron Microscopy Validation Task Force Meeting

(2012) Richard Henderson et al.   STRUCTURE

LIMITING FACTORS IN SINGLE PARTICLE CRYO ELECTRON TOMOGRAPHY

(2012) Mikhail Kudryashev et al.   Computational and Structural Biotechnology Journal

Reaching the Information Limit in Cryo-EM of Biological Macromolecules: Experimental Aspects

(2011) Robert M. Glaeser et al.   BIOPHYSICAL JOURNAL

Clustering and variance maps for cryo-electron tomography using wedge-masked differences

(2011) John M. Heumann et al.   JOURNAL OF STRUCTURAL BIOLOGY

PyTom: A python-based toolbox for localization of macromolecules in cryo-electron tomograms and subtomogram analysis

(2011) Thomas Hrabe et al.   JOURNAL OF STRUCTURAL BIOLOGY

PHENIX: a comprehensive Python-based system for macromolecular structure solution

(2010) Paul D. Adams et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

CTF determination and correction for low dose tomographic tilt series

(2009) Quanren Xiong et al.   JOURNAL OF STRUCTURAL BIOLOGY

Molecular dynamics flexible fitting: A practical guide to combine cryo-electron microscopy and X-ray crystallography

(2009) Leonardo G. Trabuco et al.   METHODS

Classification and 3D averaging with missing wedge correction in biological electron tomography☆

(2008) A. Bartesaghi et al.   JOURNAL OF STRUCTURAL BIOLOGY

Tomographic subvolume alignment and subvolume classification applied to myosin V and SIV envelope spikes

(2008) Hanspeter Winkler et al.   JOURNAL OF STRUCTURAL BIOLOGY

Classification of cryo-electron sub-tomograms using constrained correlation

(2007) Friedrich Förster et al.   JOURNAL OF STRUCTURAL BIOLOGY