Differential hydrogen sulfide production by a human cohort in response to animal- and plant-based diet interventions

A Randomized Trial Comparing the Specific Carbohydrate Diet to a Mediterranean Diet in Adults With Crohn’s Disease

(2021) James D. Lewis et al.   GASTROENTEROLOGY

Usual Dietary Fiber Intake in US Adults with Diabetes: NHANES 2013–2018

(2021) Derek Miketinas et al.   Current Developments in Nutrition

Association Between Sulfur-Metabolizing Bacterial Communities in Stool and Risk of Distal Colorectal Cancer in Men

(2020) Long H. Nguyen et al.   GASTROENTEROLOGY

Low-fat, High-fiber Diet Reduces Markers of Inflammation and Dysbiosis and Improves Quality of Life in Patients With Ulcerative Colitis

(2020) Julia Fritsch et al.   Clinical Gastroenterology and Hepatology

Human postprandial responses to food and potential for precision nutrition

(2020) Sarah E. Berry et al.   NATURE MEDICINE

Deciphering functional redundancy in the human microbiome

(2020) Liang Tian et al.   Nature Communications

A microfluidic platform for the simultaneous quantification of methanogen populations in anaerobic digestion processes

(2019) Prince P. Mathai et al.   ENVIRONMENTAL MICROBIOLOGY

Dietary Factors in Sulfur Metabolism and Pathogenesis of Ulcerative Colitis

(2019) Levi M. Teigen et al.   Nutrients

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

Profiling of Protein Degraders in Cultures of Human Gut Microbiota

(2019) Alberto Amaretti et al.   Frontiers in Microbiology

Bilophila wadsworthia aggravates high fat diet induced metabolic dysfunctions in mice

(2018) Jane M. Natividad et al.   Nature Communications

Efficacy of the Autoimmune Protocol Diet for Inflammatory Bowel Disease

(2017) Gauree G. Konijeti et al.   INFLAMMATORY BOWEL DISEASES

Dietary Therapy With the Crohn’s Disease Exclusion Diet is a Successful Strategy for Induction of Remission in Children and Adults Failing Biological Therapy

(2017) Rotem Sigall Boneh et al.   Journal of Crohns & Colitis

Patients with inflammatory bowel disease and their treating clinicians have different views regarding diet

(2016) D. Q. Holt et al.   JOURNAL OF HUMAN NUTRITION AND DIETETICS

Systematic improvement of amplicon marker gene methods for increased accuracy in microbiome studies

(2016) Daryl M Gohl et al.   NATURE BIOTECHNOLOGY

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Minor revision to V4 region SSU rRNA 806R gene primer greatly increases detection of SAR11 bacterioplankton

(2015) A Apprill et al.   AQUATIC MICROBIAL ECOLOGY

Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples

(2015) Alma E. Parada et al.   ENVIRONMENTAL MICROBIOLOGY

An anti-inflammatory diet as treatment for inflammatory bowel disease: a case series report

(2014) Barbara C Olendzki et al.   Nutrition Journal

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Diet rapidly and reproducibly alters the human gut microbiome

(2013) Lawrence A. David et al.   NATURE

Dietary-fat-induced taurocholic acid promotes pathobiont expansion and colitis in Il10 −/− mice

(2012) Suzanne Devkota et al.   NATURE

Linking Long-Term Dietary Patterns with Gut Microbial Enterotypes

(2011) G. D. Wu et al.   SCIENCE

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Lifestyle-related disease in Crohn’s disease: Relapse prevention by a semi-vegetarian diet

(2010) Mitsuro Chiba   WORLD JOURNAL OF GASTROENTEROLOGY

Sulphate-reducing bacteria and hydrogen sulphide in the aetiology of ulcerative colitis

(2009) F. E. Rowan et al.   BRITISH JOURNAL OF SURGERY

High Throughput Gene Expression Measurement with Real Time PCR in a Microfluidic Dynamic Array

(2008) Sandra L. Spurgeon et al.   PLoS One