Supervised graph co-contrastive learning for drug–target interaction prediction

Contrastive self-supervised clustering of scRNA-seq data

(2021) Madalina Ciortan et al.   BMC BIOINFORMATICS

Identifying drug–target interactions based on graph convolutional network and deep neural network

(2020) Tianyi Zhao et al.   BRIEFINGS IN BIOINFORMATICS

A learning-based method for drug-target interaction prediction based on feature representation learning and deep neural network

(2020) Jiajie Peng et al.   BMC BIOINFORMATICS

An end-to-end heterogeneous graph representation learning-based framework for drug–target interaction prediction

(2020) Jiajie Peng et al.   BRIEFINGS IN BIOINFORMATICS

Review of Drug Repositioning Approaches and Resources

(2018) Hanqing Xue et al.   International Journal of Biological Sciences

Deep-Learning-Based Drug–Target Interaction Prediction

(2017) Ming Wen et al.   JOURNAL OF PROTEOME RESEARCH

Prediction of Drug–Target Interaction Networks from the Integration of Protein Sequences and Drug Chemical Structures

(2017) Fan-Rong Meng et al.   MOLECULES

A network integration approach for drug-target interaction prediction and computational drug repositioning from heterogeneous information

(2017) Yunan Luo et al.   Nature Communications

Drug Target Protein-Protein Interaction Networks: A Systematic Perspective

(2017) Yanghe Feng et al.   Biomed Research International

Predicting drug target interactions using meta-path-based semantic network analysis

(2016) Gang Fu et al.   BMC BIOINFORMATICS

An improved approach for predicting drug–target interaction: proteochemometrics to molecular docking

(2016) Naeem Shaikh et al.   Molecular BioSystems

Drug repositioning by integrating target information through a heterogeneous network model

(2014) Wenhui Wang et al.   BIOINFORMATICS

Relating drug-protein interaction network with drug side effects

(2012) S. Mizutani et al.   BIOINFORMATICS

Prediction of Drug-Target Interactions and Drug Repositioning via Network-Based Inference

(2012) Feixiong Cheng et al.   PLoS Computational Biology

Discovery and Preclinical Validation of Drug Indications Using Compendia of Public Gene Expression Data

(2011) M. Sirota et al.   Science Translational Medicine

Drug-target interaction prediction from chemical, genomic and pharmacological data in an integrated framework

(2010) Y. Yamanishi et al.   BIOINFORMATICS

Semi-supervised drug-protein interaction prediction from heterogeneous biological spaces

(2010) Zheng Xia et al.   BMC Systems Biology

MIND-BEST: Web Server for Drugs and Target Discovery; Design, Synthesis, and Assay of MAO-B Inhibitors and Theoretical−Experimental Study of G3PDH Protein fromTrichomonas gallinae

(2010) Humberto González-Díaz et al.   JOURNAL OF PROTEOME RESEARCH

Discovery of drug mode of action and drug repositioning from transcriptional responses

(2010) F. Iorio et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA