A learning-based method for drug-target interaction prediction based on feature representation learning and deep neural network

deepDriver: Predicting Cancer Driver Genes Based on Somatic Mutations Using Deep Convolutional Neural Networks

(2019) Ping Luo et al.   Frontiers in Genetics

A learning-based framework for miRNA-disease association identification using neural networks

(2019) Jiajie Peng et al.   BIOINFORMATICS

Predicting Parkinson's Disease Genes Based on Node2vec and Autoencoder

(2019) Jiajie Peng et al.   Frontiers in Genetics

Combining gene ontology with deep neural networks to enhance the clustering of single cell RNA-Seq data

(2019) Jiajie Peng et al.   BMC BIOINFORMATICS

Protein Function Prediction: From Traditional Classifier to Deep Learning

(2019) Zhibin Lv et al.   PROTEOMICS

NeoDTI: Neural integration of neighbor information from a heterogeneous network for discovering new drug-target interactions

(2018) Fangping Wan et al.   BIOINFORMATICS

Network-Based Methods for Prediction of Drug-Target Interactions

(2018) Zengrui Wu et al.   Frontiers in Pharmacology

Deep-Learning-Based Drug–Target Interaction Prediction

(2017) Ming Wen et al.   JOURNAL OF PROTEOME RESEARCH

A network integration approach for drug-target interaction prediction and computational drug repositioning from heterogeneous information

(2017) Yunan Luo et al.   Nature Communications

Inferring new indications for approved drugs via random walk on drug-disease heterogenous networks

(2016) Hui Liu et al.   BMC BIOINFORMATICS

Neighborhood Regularized Logistic Matrix Factorization for Drug-Target Interaction Prediction

(2016) Yong Liu et al.   PLoS Computational Biology

Robust stereo matching using adaptive random walk with restart algorithm

(2015) Sehyung Lee et al.   IMAGE AND VISION COMPUTING

Drug repositioning by integrating target information through a heterogeneous network model

(2014) Wenhui Wang et al.   BIOINFORMATICS

Drug–target interaction prediction by learning from local information and neighbors

(2012) Jian-Ping Mei et al.   BIOINFORMATICS

The Comparative Toxicogenomics Database: update 2013

(2012) Allan Peter Davis et al.   NUCLEIC ACIDS RESEARCH

Prediction of Drug-Target Interactions and Drug Repositioning via Network-Based Inference

(2012) Feixiong Cheng et al.   PLoS Computational Biology

Drug-target interaction prediction from chemical, genomic and pharmacological data in an integrated framework

(2010) Y. Yamanishi et al.   BIOINFORMATICS

Semi-supervised drug-protein interaction prediction from heterogeneous biological spaces

(2010) Zheng Xia et al.   BMC Systems Biology

MIND-BEST: Web Server for Drugs and Target Discovery; Design, Synthesis, and Assay of MAO-B Inhibitors and Theoretical−Experimental Study of G3PDH Protein fromTrichomonas gallinae

(2010) Humberto González-Díaz et al.   JOURNAL OF PROTEOME RESEARCH

A side effect resource to capture phenotypic effects of drugs

(2010) Michael Kuhn et al.   Molecular Systems Biology

AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility

(2009) Garrett M. Morris et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Human Protein Reference Database--2009 update

(2008) T. S. Keshava Prasad et al.   NUCLEIC ACIDS RESEARCH