iDynoMiCS: next-generation individual-based modelling of biofilms

Growth dependence of conjugation explains limited plasmid invasion in biofilms: an individual-based modelling study

(2011) Brian V. Merkey et al.   ENVIRONMENTAL MICROBIOLOGY

Microbial community structure in autotrophic nitrifying granules characterized by experimental and simulation analyses

(2009) Shinya Matsumoto et al.   ENVIRONMENTAL MICROBIOLOGY

Modeling how soluble microbial products (SMP) support heterotrophic bacteria in autotroph-based biofilms

(2009) Brian V. Merkey et al.   JOURNAL OF THEORETICAL BIOLOGY

Bacteria can form interconnected microcolonies when a self-excreted product reduces their surface motility: evidence from individual-based model simulations

(2009) Nabil Mabrouk et al.   THEORY IN BIOSCIENCES

Effect of oxygen gradients on the activity and microbial community structure of a nitrifying, membrane-aerated biofilm

(2008) Leon S. Downing et al.   BIOTECHNOLOGY AND BIOENGINEERING

A two-dimensional continuum model of biofilm growth incorporating fluid flow and shear stress based detachment

(2008) Ravindra Duddu et al.   BIOTECHNOLOGY AND BIOENGINEERING

A bunch of tiny individuals—Individual-based modeling for microbes

(2008) Ferdi L. Hellweger et al.   ECOLOGICAL MODELLING

Physiological heterogeneity in biofilms

(2008) Philip S. Stewart et al.   NATURE REVIEWS MICROBIOLOGY