The methanogenic redox cofactor F420 is widely synthesized by aerobic soil bacteria

Elongation of the Poly-γ-glutamate Tail of F420Requires Both Domains of the F420:γ-Glutamyl Ligase (FbiB) ofMycobacterium tuberculosis

(2016) Ghader Bashiri et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Physiology, Biochemistry, and Applications of F420- and Fo-Dependent Redox Reactions

(2016) Chris Greening et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Enzyme Function Initiative-Enzyme Similarity Tool (EFI-EST): A web tool for generating protein sequence similarity networks

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Genomic and metagenomic surveys of hydrogenase distribution indicate H2 is a widely utilised energy source for microbial growth and survival

(2015) Chris Greening et al.   ISME Journal

Sequence–Structure–Function Classification of a Catalytically Diverse Oxidoreductase Superfamily in Mycobacteria

(2015) F. Hafna Ahmed et al.   JOURNAL OF MOLECULAR BIOLOGY

Biosynthetic Versatility and Coordinated Action of 5′-Deoxyadenosyl Radicals in Deazaflavin Biosynthesis

(2015) Benjamin Philmus et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

The Phyre2 web portal for protein modeling, prediction and analysis

(2015) Lawrence A Kelley et al.   Nature Protocols

Origins of major archaeal clades correspond to gene acquisitions from bacteria

(2014) Shijulal Nelson-Sathi et al.   NATURE

An environmental bacterial taxon with a large and distinct metabolic repertoire

(2014) Micheal C. Wilson et al.   NATURE

An obligately aerobic soil bacterium activates fermentative hydrogen production to survive reductive stress during hypoxia

(2014) M. Berney et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

MGcV: the microbial genomic context viewer for comparative genome analysis

(2013) Lex Overmars et al.   BMC GENOMICS

Uncovering the Enzymes that Catalyze the Final Steps in Oxytetracycline Biosynthesis

(2013) Peng Wang et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Rv0132c of Mycobacterium tuberculosis Encodes a Coenzyme F420-Dependent Hydroxymycolic Acid Dehydrogenase

(2013) Endang Purwantini et al.   PLoS One

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

Improved model quality assessment using ProQ2

(2012) Arjun Ray et al.   BMC BIOINFORMATICS

The genome of the ammonia-oxidizingCandidatusNitrososphaera gargensis: insights into metabolic versatility and environmental adaptations

(2012) Anja Spang et al.   ENVIRONMENTAL MICROBIOLOGY

A novel F420-dependent anti-oxidant mechanism protectsMycobacterium tuberculosisagainst oxidative stress and bactericidal agents

(2012) Meera Gurumurthy et al.   MOLECULAR MICROBIOLOGY

F420H2-Dependent Degradation of Aflatoxin and other Furanocoumarins Is Widespread throughout the Actinomycetales

(2012) Gauri V. Lapalikar et al.   PLoS One

Pruning Rogue Taxa Improves Phylogenetic Accuracy: An Efficient Algorithm and Webservice

(2012) Andre J. Aberer et al.   SYSTEMATIC BIOLOGY

IMG: the integrated microbial genomes database and comparative analysis system

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Critical Role of 7,8-Didemethyl-8-hydroxy-5-deazariboflavin for Photoreactivation inChlamydomonas reinhardtii

(2010) Jason L. Petersen et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Identification and characterization of two families of F420H2-dependent reductases from Mycobacteria that catalyse aflatoxin degradation

(2010) Matthew C. Taylor et al.   MOLECULAR MICROBIOLOGY

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Metabolic Engineering of Cofactor F420 Production in Mycobacterium smegmatis

(2010) Ghader Bashiri et al.   PLoS One

Cloning and Characterization of the Biosynthetic Gene Cluster for Tomaymycin, an SJG-136 Monomeric Analog

(2009) W. Li et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Using Sequence Similarity Networks for Visualization of Relationships Across Diverse Protein Superfamilies

(2009) Holly J. Atkinson et al.   PLoS One

The archaeal cofactor F0is a light-harvesting antenna chromophore in eukaryotes

(2009) Andreas F. Glas et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification and Characterization of the 2-Phospho-l-lactate Guanylyltransferase Involved in Coenzyme F420Biosynthesis†

(2008) Laura L. Grochowski et al.   BIOCHEMISTRY

Crystal Structures of F420-dependent Glucose-6-phosphate Dehydrogenase FGD1 Involved in the Activation of the Anti-tuberculosis Drug Candidate PA-824 Reveal the Basis of Coenzyme and Substrate Binding

(2008) Ghader Bashiri et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Biodegradation of 2,4,6-trinitrophenol by Rhodococcus sp. isolated from a picric acid-contaminated soil

(2008) Jinyou Shen et al.   JOURNAL OF HAZARDOUS MATERIALS

Correlated Evolution of Interacting Proteins: Looking Behind the Mirrortree

(2008) Maricel G. Kann et al.   JOURNAL OF MOLECULAR BIOLOGY