Warming and nutrient enrichment in combination increase stochasticity and beta diversity of bacterioplankton assemblages across freshwater mesocosms

pH Influences the Importance of Niche-Related and Neutral Processes in Lacustrine Bacterioplankton Assembly

(2015) Lijuan Ren et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The quality of organic matter shapes the functional biogeography of bacterioplankton across boreal freshwater ecosystems

(2015) Clara Ruiz-González et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Changes in the phytoplankton-bacteria coupling triggered by joint action of UVR, nutrients, and warming in Mediterranean high-mountain lakes

(2015) Cristina Durán et al.   LIMNOLOGY AND OCEANOGRAPHY

High-Throughput Metagenomic Technologies for Complex Microbial Community Analysis: Open and Closed Formats

(2015) Jizhong Zhou et al.   mBio

Contrasting diversity of epibiotic bacteria and surrounding bacterioplankton of a common submerged macrophyte,Potamogeton crispus, in freshwater lakes

(2014) Dan He et al.   FEMS MICROBIOLOGY ECOLOGY

Homogenization of fish assemblages in different lake depth strata at local and regional scales

(2014) Rosemberg F. Menezes et al.   FRESHWATER BIOLOGY

Phylogenetic and functional gene structure shifts of the oral microbiomes in periodontitis patients

(2014) Yan Li et al.   ISME Journal

Climate change impacts on lakes: an integrated ecological perspective based on a multi-faceted approach, with special focus on shallow lakes

(2014) Erik Jeppesen et al.   JOURNAL OF LIMNOLOGY

Key roles for freshwater Actinobacteria revealed by deep metagenomic sequencing

(2014) Rohit Ghai et al.   MOLECULAR ECOLOGY

Stochasticity, succession, and environmental perturbations in a fluidic ecosystem

(2014) Jizhong Zhou et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Allied attack: climate change and eutrophication

(2014) Brian Moss   Inland Waters

Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible

(2014) Paul J. McMurdie et al.   PLoS Computational Biology

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Impact of warming on phyto-bacterioplankton coupling and bacterial community composition in experimental mesocosms

(2013) Markus von Scheibner et al.   ENVIRONMENTAL MICROBIOLOGY

Bacterioplankton communities turn unstable and become small under increased temperature and nutrient-enriched conditions

(2013) Lijuan Ren et al.   FEMS MICROBIOLOGY ECOLOGY

Daily net ecosystem production in lakes predicted from midday dissolved oxygen saturation: analysis of a five-year high frequency dataset from 24 mesocosms with contrasting trophic states and temperatures

(2013) Anders Nielsen et al.   LIMNOLOGY AND OCEANOGRAPHY-METHODS

Long-term effects of warming and nutrients on microbes and other plankton in mesocosms

(2012) ARDA ÖZEN et al.   FRESHWATER BIOLOGY

Plankton dynamics under different climatic conditions in space and time

(2012) LISETTE N. DE SENERPONT DOMIS et al.   FRESHWATER BIOLOGY

Biogeography of bacterial communities exposed to progressive long-term environmental change

(2012) Ramiro Logares et al.   ISME Journal

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Warming shifts top-down and bottom-up control of pond food web structure and function

(2012) J. B. Shurin et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Phylogenetic clustering increases with elevation for microbes

(2012) Jianjun Wang et al.   Environmental Microbiology Reports

Alga-Derived Substrates Select for Distinct Betaproteobacterial Lineages and Contribute to Niche Separation in Limnohabitans Strains

(2011) Karel Šimek et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Reproducibility and quantitation of amplicon sequencing-based detection

(2011) Jizhong Zhou et al.   ISME Journal

Temporal variation of β-diversity and assembly mechanisms in a bacterial metacommunity

(2011) Silke Langenheder et al.   ISME Journal

The effect of temperature on the coupling between phosphorus and growth in lacustrine bacterioplankton communities

(2011) Edward K. Hall et al.   LIMNOLOGY AND OCEANOGRAPHY

A Guide to the Natural History of Freshwater Lake Bacteria

(2011) R. J. Newton et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Disentangling the importance of ecological niches from stochastic processes across scales

(2011) J. M. Chase et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The Importance of Dispersal for Bacterial Community Composition and Functioning

(2011) Eva S. Lindström et al.   PLoS One

Reducing the Effects of PCR Amplification and Sequencing Artifacts on 16S rRNA-Based Studies

(2011) Patrick D. Schloss et al.   PLoS One

Using null models to disentangle variation in community dissimilarity from variation in α-diversity

(2011) Jonathan M. Chase et al.   Ecosphere

Simulated lake phytoplankton composition shifts toward cyanobacteria dominance in a future warmer climate

(2010) Hampus Markensten et al.   ECOLOGICAL APPLICATIONS

Navigating the multiple meanings of β diversity: a roadmap for the practicing ecologist

(2010) Marti J. Anderson et al.   ECOLOGY LETTERS

Temperature controls on aquatic bacterial production and community dynamics in arctic lakes and streams

(2010) Heather E. Adams et al.   ENVIRONMENTAL MICROBIOLOGY

Nutrient enrichment homogenizes lake benthic assemblages at local and regional scales

(2009) Ian Donohue et al.   ECOLOGY

Productivity and community structure of ectomycorrhizal fungal sporocarps under increased atmospheric CO2and O3

(2009) Carrie Andrew et al.   ECOLOGY LETTERS

The merging of community ecology and phylogenetic biology

(2009) Jeannine Cavender-Bares et al.   ECOLOGY LETTERS

Regional invariance among microbial communities

(2009) Örjan Östman et al.   ECOLOGY LETTERS

Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates

(2009) Victor Kunin et al.   ENVIRONMENTAL MICROBIOLOGY

The vertical distribution of bacterial and archaeal communities in the water and sediment of Lake Taihu

(2009) Wenjin Ye et al.   FEMS MICROBIOLOGY ECOLOGY

Global warming and eutrophication: effects on water chemistry and autotrophic communities in experimental hypertrophic shallow lake mesocosms

(2009) Heidrun Feuchtmayr et al.   JOURNAL OF APPLIED ECOLOGY

Global warming benefits the small in aquatic ecosystems

(2009) M. Daufresne et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Simultaneous Inference in General Parametric Models

(2008) Torsten Hothorn et al.   BIOMETRICAL JOURNAL

Toward a mechanistic understanding of how natural bacterial communities respond to changes in temperature in aquatic ecosystems

(2008) Edward K Hall et al.   ISME Journal

A latitudinal diversity gradient in planktonic marine bacteria

(2008) J. A. Fuhrman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA