Rocks and clocks revised: New promises and challenges in dating the primate tree of life
Published 2022 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Rocks and clocks revised: New promises and challenges in dating the primate tree of life
Authors
Keywords
-
Journal
EVOLUTIONARY ANTHROPOLOGY
Volume -, Issue -, Pages -
Publisher
Wiley
Online
2022-02-01
DOI
10.1002/evan.21940
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- The genomics of ecological flexibility, large brains, and long lives in capuchin monkeys revealed with fecalFACS
- (2021) Joseph D. Orkin et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Divergence-time estimates for hominins provide insight into encephalization and body mass trends in human evolution
- (2021) Hans P. Püschel et al. Nature Ecology & Evolution
- Pedigree-based and phylogenetic methods support surprising patterns of mutation rate and spectrum in the gray mouse lemur
- (2021) C. Ryan Campbell et al. HEREDITY
- Evolutionary and phylogenetic insights from a nuclear genome sequence of the extinct, giant, “subfossil” koala lemur Megaladapis edwardsi
- (2021) Stephanie Marciniak et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- An ancient baboon genome demonstrates long-term population continuity in southern Africa
- (2020) Iain Mathieson et al. Genome Biology and Evolution
- Paternal age in rhesus macaques is positively associated with germline mutation accumulation but not with measures of offspring sociability
- (2020) Richard J. Wang et al. GENOME RESEARCH
- Broadening primate genomics: new insights into the ecology and evolution of primate gene regulation
- (2020) Jordan A Anderson et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
- Evolution of the mutation rate across primates
- (2020) Manjusha Chintalapati et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
- Branching out: what omics can tell us about primate evolution
- (2020) Lukas FK Kuderna et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
- Cryptic Patterns of Speciation in Cryptic Primates: Microendemic Mouse Lemurs and the Multispecies Coalescent
- (2020) Jelmer Poelstra et al. SYSTEMATIC BIOLOGY
- Molecular Clocks without Rocks: New Solutions for Old Problems
- (2020) George P. Tiley et al. TRENDS IN GENETICS
- A comparison of humans and baboons suggests germline mutation rates do not track cell divisions
- (2020) Felix L. Wu et al. PLOS BIOLOGY
- Primate phylogenomics uncovers multiple rapid radiations and ancient interspecific introgression
- (2020) Dan Vanderpool et al. PLOS BIOLOGY
- The Diversity of Primates: From Biomedicine to Conservation Genomics
- (2020) Joseph D. Orkin et al. Annual Review of Animal Biosciences
- Homoplasy-based partitioning outperforms alternatives in Bayesian analysis of discrete morphological data
- (2019) Brunno B Rosa et al. SYSTEMATIC BIOLOGY
- Mammal extinctions and the increasing isolation of humans on the tree of life
- (2019) Sandrine Pavoine et al. Ecology and Evolution
- Direct estimation of mutations in great apes reconciles phylogenetic dating
- (2019) Søren Besenbacher et al. Nature Ecology & Evolution
- The comparative genomics and complex population history of Papio baboons
- (2019) Jeffrey Rogers et al. Science Advances
- Data partitioning and correction for ascertainment bias reduce the uncertainty of placental mammal divergence times inferred from the morphological clock
- (2019) Ian V. Caldas et al. Ecology and Evolution
- Bayesian Estimation of Species Divergence Times Using Correlated Quantitative Characters
- (2019) Sandra Álvarez-Carretero et al. SYSTEMATIC BIOLOGY
- Primitive Old World monkey from the earliest Miocene of Kenya and the evolution of cercopithecoid bilophodonty
- (2019) D. Tab Rasmussen et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Whole-Genome Analyses Resolve the Phylogeny of Flightless Birds (Palaeognathae) in the Presence of an Empirical Anomaly Zone
- (2019) Alison Cloutier et al. SYSTEMATIC BIOLOGY
- Colonization time on island settings: lessons from the Hawaiian and Canary Island floras
- (2019) C García-Verdugo et al. BOTANICAL JOURNAL OF THE LINNEAN SOCIETY
- The Genome of the Endangered Dryas Monkey Provides New Insights into the Evolutionary History of the Vervets
- (2019) Tom van der Valk et al. MOLECULAR BIOLOGY AND EVOLUTION
- Evolutionary Models for the Diversification of Placental Mammals Across the KPg Boundary
- (2019) Mark S. Springer et al. Frontiers in Genetics
- Using the Fossil Record to Evaluate Timetree Timescales
- (2019) Charles R. Marshall Frontiers in Genetics
- Inferring the mammal tree: Species-level sets of phylogenies for questions in ecology, evolution, and conservation
- (2019) Nathan S. Upham et al. PLOS BIOLOGY
- ASTRAL-III: polynomial time species tree reconstruction from partially resolved gene trees
- (2018) Chao Zhang et al. BMC BIOINFORMATICS
- A Comprehensive and Dated Phylogenomic Analysis of Butterflies
- (2018) Marianne Espeland et al. CURRENT BIOLOGY
- How many pygmy marmoset ( Cebuella Gray, 1870) species are there? A taxonomic re-appraisal based on new molecular evidence
- (2018) Jean P. Boubli et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Empirical realism of simulated data is more important than the model used to generate it: a reply to Goloboff et al .
- (2018) Joseph E. O'Reilly et al. PALAEONTOLOGY
- Using Phylogenomic Data to Explore the Effects of Relaxed Clocks and Calibration Strategies on Divergence Time Estimation: Primates as a Test Case
- (2018) Mario Dos Reis et al. SYSTEMATIC BIOLOGY
- Early arrival and climatically-linked geographic expansion of New World monkeys from tiny African ancestors
- (2018) Daniele Silvestro et al. SYSTEMATIC BIOLOGY
- Methylation-based enrichment facilitates low-cost, noninvasive genomic scale sequencing of populations from feces
- (2018) Kenneth L. Chiou et al. Scientific Reports
- The interplay of past diversification and evolutionary isolation with present imperilment across the amphibian tree of life
- (2018) Walter Jetz et al. Nature Ecology & Evolution
- A RAD-sequencing approach to genome-wide marker discovery, genotyping, and phylogenetic inference in a diverse radiation of primates
- (2018) Lina M. Valencia et al. PLoS One
- Fossil lemurs from Egypt and Kenya suggest an African origin for Madagascar’s aye-aye
- (2018) Gregg F. Gunnell et al. Nature Communications
- Historical Genomes Reveal the Genomic Consequences of Recent Population Decline in Eastern Gorillas
- (2018) Tom van der Valk et al. CURRENT BIOLOGY
- Ancient DNA of the extinct Jamaican monkey Xenothrix reveals extreme insular change within a morphologically conservative radiation
- (2018) Roseina Woods et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- An algorithm for morphological phylogenetic analysis with inapplicable data
- (2018) Martin D Brazeau et al. SYSTEMATIC BIOLOGY
- Closing the gap between palaeontological and neontological speciation and extinction rate estimates
- (2018) Daniele Silvestro et al. Nature Communications
- Direct estimate of the spontaneous germ line mutation rate in African green monkeys
- (2017) Susanne P. Pfeifer EVOLUTION
- Harnessing ancient genomes to study the history of human adaptation
- (2017) Stephanie Marciniak et al. NATURE REVIEWS GENETICS
- Use of Continuous Traits Can Improve Morphological Phylogenetics
- (2017) Caroline Parins-Fukuchi SYSTEMATIC BIOLOGY
- New adapiform primate fossils from the late Eocene of Egypt
- (2017) Erik R. Seiffert et al. HISTORICAL BIOLOGY
- Testing the adaptive radiation hypothesis for the lemurs of Madagascar
- (2017) James P. Herrera Royal Society Open Science
- Impending extinction crisis of the world’s primates: Why primates matter
- (2017) Alejandro Estrada et al. Science Advances
- Fully-sampled phylogenies of squamates reveal evolutionary patterns in threat status
- (2016) João Filipe Riva Tonini et al. BIOLOGICAL CONSERVATION
- Tips and nodes are complementary not competing approaches to the calibration of molecular clocks
- (2016) Joseph E. O'Reilly et al. Biology Letters
- Dating placentalia: Morphological clocks fail to close the molecular fossil gap
- (2016) Mark N. Puttick et al. EVOLUTION
- Efficient Genome-Wide Sequencing and Low-Coverage Pedigree Analysis from Noninvasively Collected Samples
- (2016) N. Snyder-Mackler et al. GENETICS
- The role of forest expansion and contraction in species diversification among galagos (Primates: Galagidae)
- (2016) Luca Pozzi JOURNAL OF BIOGEOGRAPHY
- The evolutionary relationships and age of Homo naledi: An assessment using dated Bayesian phylogenetic methods
- (2016) Mana Dembo et al. JOURNAL OF HUMAN EVOLUTION
- Effects of missing data on topological inference using a Total Evidence approach
- (2016) Thomas Guillerme et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Closing the gap between rocks and clocks using total-evidence dating
- (2016) Fredrik Ronquist et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Bayesian Total-Evidence Dating Reveals the Recent Crown Radiation of Penguins
- (2016) Alexandra Gavryushkina et al. SYSTEMATIC BIOLOGY
- Phylogeny and Divergence Times of Lemurs Inferred with Recent and Ancient Fossils in the Tree
- (2016) James P. Herrera et al. SYSTEMATIC BIOLOGY
- Biogeographic Dating of Speciation Times Using Paleogeographically Informed Processes
- (2016) Michael J. Landis SYSTEMATIC BIOLOGY
- Human Germline Mutation and the Erratic Evolutionary Clock
- (2016) Priya Moorjani et al. PLOS BIOLOGY
- The use of museum specimens with high-throughput DNA sequencers
- (2015) Andrew S. Burrell et al. JOURNAL OF HUMAN EVOLUTION
- Comparative and population mitogenomic analyses of Madagascar's extinct, giant ‘subfossil’ lemurs
- (2015) Logan Kistler et al. JOURNAL OF HUMAN EVOLUTION
- An evaluation of fossil tip-dating versus node-age calibrations in tetraodontiform fishes (Teleostei: Percomorphaceae)
- (2015) Dahiana Arcila et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Biogeography in deep time – What do phylogenetics, geology, and paleoclimate tell us about early platyrrhine evolution?
- (2015) Richard F. Kay MOLECULAR PHYLOGENETICS AND EVOLUTION
- Bayesian analysis of a morphological supermatrix sheds light on controversial fossil hominin relationships
- (2015) Mana Dembo et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- The Fossil Calibration Database—A New Resource for Divergence Dating
- (2015) Daniel T. Ksepka et al. SYSTEMATIC BIOLOGY
- Total-Evidence Dating under the Fossilized Birth–Death Process
- (2015) Chi Zhang et al. SYSTEMATIC BIOLOGY
- Modeling Character Change Heterogeneity in Phylogenetic Analyses of Morphology through the Use of Priors
- (2015) April M. Wright et al. SYSTEMATIC BIOLOGY
- Remarkable ancient divergences amongst neglected lorisiform primates
- (2015) Luca Pozzi et al. ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY
- A multilocus phylogeny reveals deep lineages within African galagids (Primates: Galagidae)
- (2014) Luca Pozzi et al. BMC EVOLUTIONARY BIOLOGY
- Molecular-clock methods for estimating evolutionary rates and timescales
- (2014) Simon Y. W. Ho et al. MOLECULAR ECOLOGY
- Primate phylogenetic relationships and divergence dates inferred from complete mitochondrial genomes
- (2014) Luca Pozzi et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Gibbon genome and the fast karyotype evolution of small apes
- (2014) Lucia Carbone et al. NATURE
- Comparative primate genomics: emerging patterns of genome content and dynamics
- (2014) Jeffrey Rogers et al. NATURE REVIEWS GENETICS
- The fossilized birth-death process for coherent calibration of divergence-time estimates
- (2014) T. A. Heath et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Whole-genome analyses resolve early branches in the tree of life of modern birds
- (2014) E. D. Jarvis et al. SCIENCE
- Evaluating Summary Methods for Multilocus Species Tree Estimation in the Presence of Incomplete Lineage Sorting
- (2014) Siavash Mirarab et al. SYSTEMATIC BIOLOGY
- Bayesian Inference of Sampled Ancestor Trees for Epidemiology and Fossil Calibration
- (2014) Alexandra Gavryushkina et al. PLoS Computational Biology
- Palaeontological evidence for an Oligocene divergence between Old World monkeys and apes
- (2013) Nancy J. Stevens et al. NATURE
- Divergence Times and the Evolutionary Radiation of New World Monkeys (Platyrrhini, Primates): An Analysis of Fossil and Molecular Data
- (2013) S. Ivan Perez et al. PLoS One
- Coalescent-Based Genome Analyses Resolve the Early Branches of the Euarchontoglires
- (2013) Vikas Kumar et al. PLoS One
- The Placental Mammal Ancestor and the Post-K-Pg Radiation of Placentals
- (2013) M. A. O'Leary et al. SCIENCE
- A Comparative Method for Both Discrete and Continuous Characters Using the Threshold Model
- (2012) Joseph Felsenstein AMERICAN NATURALIST
- The global diversity of birds in space and time
- (2012) W. Jetz et al. NATURE
- Revising the human mutation rate: implications for understanding human evolution
- (2012) Aylwyn Scally et al. NATURE REVIEWS GENETICS
- Highly Incomplete Taxa Can Rescue Phylogenetic Analyses from the Negative Impacts of Limited Taxon Sampling
- (2012) John J. Wiens et al. PLoS One
- Macroevolutionary Dynamics and Historical Biogeography of Primate Diversification Inferred from a Species Supermatrix
- (2012) Mark S. Springer et al. PLoS One
- Generation times in wild chimpanzees and gorillas suggest earlier divergence times in great ape and human evolution
- (2012) K. E. Langergraber et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Resolving conflict in eutherian mammal phylogeny using phylogenomics and the multispecies coalescent model
- (2012) S. Song et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Phylogenomic datasets provide both precision and accuracy in estimating the timescale of placental mammal phylogeny
- (2012) M. dos Reis et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- A Total-Evidence Approach to Dating with Fossils, Applied to the Early Radiation of the Hymenoptera
- (2012) Fredrik Ronquist et al. SYSTEMATIC BIOLOGY
- FITTING MODELS OF CONTINUOUS TRAIT EVOLUTION TO INCOMPLETELY SAMPLED COMPARATIVE DATA USING APPROXIMATE BAYESIAN COMPUTATION
- (2011) Graham J. Slater et al. EVOLUTION
- The stem catarrhine Saadanius does not inform the timing of the origin of crown catarrhines
- (2011) Luca Pozzi et al. JOURNAL OF HUMAN EVOLUTION
- Divergence Time Estimation Using Fossils as Terminal Taxa and the Origins of Lissamphibia
- (2011) R. Alexander Pyron SYSTEMATIC BIOLOGY
- Best Practices for Justifying Fossil Calibrations
- (2011) James F. Parham et al. SYSTEMATIC BIOLOGY
- Missing Data in Phylogenetic Analysis: Reconciling Results from Simulations and Empirical Data
- (2011) John J. Wiens et al. SYSTEMATIC BIOLOGY
- Analysis of Genetic Inheritance in a Family Quartet by Whole-Genome Sequencing
- (2010) J. C. Roach et al. SCIENCE
- Dating Primate Divergences through an Integrated Analysis of Palaeontological and Molecular Data
- (2010) Richard D. Wilkinson et al. SYSTEMATIC BIOLOGY
- Combining Phylogenomics and Fossils in Higher-Level Squamate Reptile Phylogeny: Molecular Data Change the Placement of Fossil Taxa
- (2010) John J. Wiens et al. SYSTEMATIC BIOLOGY
- Successive radiations, not stasis, in the South American primate fauna
- (2009) J. A. Hodgson et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Accounting for Calibration Uncertainty in Phylogenetic Estimation of Evolutionary Divergence Times
- (2009) Simon Y. W. Ho et al. SYSTEMATIC BIOLOGY
- The Effect of Ambiguous Data on Phylogenetic Estimates Obtained by Maximum Likelihood and Bayesian Inference
- (2009) Alan R. Lemmon et al. SYSTEMATIC BIOLOGY
- Caveats on the Use of Fossil Calibrations for Molecular Dating: A Comment on Near et al.
- (2007) James F. Parham et al. AMERICAN NATURALIST
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started