- Home
- Publications
- Publication Search
- Publication Details
Title
An Insight of RuBisCO Evolution through a Multilevel Approach
Authors
Keywords
-
Journal
Biomolecules
Volume 11, Issue 12, Pages 1761
Publisher
MDPI AG
Online
2021-11-25
DOI
10.3390/biom11121761
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Demystifying Chronic Kidney Disease of Unknown Etiology (CKDu): Computational Interaction Analysis of Pesticides and Metabolites with Vital Renal Enzymes
- (2021) Harindu Rajapaksha et al. Biomolecules
- Molecular Dynamics Scoring of Protein–Peptide Models Derived from Coarse-Grained Docking
- (2021) Mateusz Zalewski et al. MOLECULES
- The Bio3D Packages for Structural Bioinformatics
- (2020) Barry J. Grant et al. PROTEIN SCIENCE
- Rubisco activase requires residues in the large subunit N-terminus to remodel inhibited plant Rubisco
- (2020) Jediael Ng et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Molecular simulations unravel the molecular principles that mediate selective permeability of carboxysome shell protein
- (2020) Matthew Faulkner et al. Scientific Reports
- Biophysical analysis of the structural evolution of substrate specificity in RuBisCO
- (2020) Saroj Poudel et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference
- (2019) Alexey M Kozlov et al. BIOINFORMATICS
- Exploring the effect of inhibitor AKB‐9778 on VE‐PTP by molecular docking and molecular dynamics simulation
- (2019) Wen‐Shan Liu et al. JOURNAL OF CELLULAR BIOCHEMISTRY
- Structural Perturbations of Rhodopseudomonas palustris Form II RuBisCO Mutant Enzymes That Affect CO2 Fixation
- (2019) Sriram Satagopan et al. BIOCHEMISTRY
- MARK4 protein can explore the active-like conformations in its non-phosphorylated state
- (2019) Sajjad Ahrari et al. Scientific Reports
- Evolutionary trends in RuBisCO kinetics and their co‐evolution with CO 2 concentrating mechanisms
- (2019) Concepción Iñiguez et al. PLANT JOURNAL
- OUP accepted manuscript
- (2018) BIOINFORMATICS
- A short history of RubisCO: the rise and fall (?) of Nature's predominant CO 2 fixing enzyme
- (2018) Tobias J Erb et al. CURRENT OPINION IN BIOTECHNOLOGY
- Exploring the effect of E76K mutation on SHP2 cause gain-of-function activity by a molecular dynamics study
- (2018) Wei-Ya Li et al. JOURNAL OF CELLULAR BIOCHEMISTRY
- Exploring the effect of N308D mutation on protein tyrosine phosphatase-2 cause gain-of-function activity by a molecular dynamics study
- (2018) Ying-Zhan Sun et al. JOURNAL OF CELLULAR BIOCHEMISTRY
- Coupled molecular dynamics mediate long- and short-range epistasis between mutations that affect stability and aggregation kinetics
- (2018) Haoran Yu et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Exploring the reason for increased activity of SHP2 caused by D61Y mutation through molecular dynamics
- (2018) Rui-Rui Wang et al. COMPUTATIONAL BIOLOGY AND CHEMISTRY
- Constraining the timing of the Great Oxidation Event within the Rubisco phylogenetic tree
- (2017) B. Kacar et al. Geobiology
- A unique structural domain inMethanococcoides burtoniiribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) acts as a small subunit mimic
- (2017) Laura H. Gunn et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Exploring the effect of D61G mutation on SHP2 cause gain of function activity by a molecular dynamics study
- (2017) Hong-Lian Li et al. JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS
- MolProbity: More and better reference data for improved all-atom structure validation
- (2017) Christopher J. Williams et al. PROTEIN SCIENCE
- Structure-Activity Relationship in TLR4 Mutations: Atomistic Molecular Dynamics Simulations and Residue Interaction Network Analysis
- (2017) Muhammad Ayaz Anwar et al. Scientific Reports
- Comparative modeling and molecular dynamics suggest high carboxylase activity of the Cyanobium sp. CACIAM14 RbcL protein
- (2016) Andrei Santos Siqueira et al. JOURNAL OF MOLECULAR MODELING
- Mutation design of a thermophilic Rubisco based on three-dimensional structure enhances its activity at ambient temperature
- (2016) Masahiro Fujihashi et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- PhyloBot: A Web Portal for Automated Phylogenetics, Ancestral Sequence Reconstruction, and Exploration of Mutational Trajectories
- (2016) Victor Hanson-Smith et al. PLoS Computational Biology
- In silicoinvestigation of PARP-1 catalytic domains inholoandapostates for the design of high-affinity PARP-1 inhibitors
- (2015) Ramin Ekhteiari Salmas et al. JOURNAL OF ENZYME INHIBITION AND MEDICINAL CHEMISTRY
- Molecular insights of protein contour recognition with ligand pharmacophoric sites through combinatorial library design and MD simulation in validating HTLV-1 PR inhibitors
- (2015) Chandrabose Selvaraj et al. Molecular BioSystems
- The CO2 concentrating mechanism and photosynthetic carbon assimilation in limiting CO2 : how Chlamydomonas works against the gradient
- (2015) Yingjun Wang et al. PLANT JOURNAL
- Automatic Identification of Mobile and Rigid Substructures in Molecular Dynamics Simulations and Fractional Structural Fluctuation Analysis
- (2015) Leandro Martínez PLoS One
- Evol and ProDy for bridging protein sequence evolution and structural dynamics
- (2014) A. Bakan et al. BIOINFORMATICS
- Integrating protein structural dynamics and evolutionary analysis with Bio3D
- (2014) Lars Skjærven et al. BMC BIOINFORMATICS
- Structure-Function Studies with the Unique Hexameric Form II Ribulose-1,5-bisphosphate Carboxylase/Oxygenase (Rubisco) fromRhodopseudomonas palustris
- (2014) Sriram Satagopan et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- CHARMM36 all-atom additive protein force field: Validation based on comparison to NMR data
- (2013) Jing Huang et al. JOURNAL OF COMPUTATIONAL CHEMISTRY
- MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0
- (2013) Koichiro Tamura et al. MOLECULAR BIOLOGY AND EVOLUTION
- Structural mechanism of RuBisCO activation by carbamylation of the active site lysine
- (2012) B. Stec PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- ProDy: Protein Dynamics Inferred from Theory and Experiments
- (2011) A. Bakan et al. BIOINFORMATICS
- MSAProbs: multiple sequence alignment based on pair hidden Markov models and partition function posterior probabilities
- (2010) Y. Liu et al. BIOINFORMATICS
- Structure-based Catalytic Optimization of a Type III Rubisco from a Hyperthermophile
- (2010) Yuichi Nishitani et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
- (2010) Stéphane Guindon et al. SYSTEMATIC BIOLOGY
- Highly Conserved Small Subunit Residues Influence Rubisco Large Subunit Catalysis
- (2009) Todor Genkov et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Structural and Functional Similarities between a Ribulose-1,5-bisphosphate Carboxylase/Oxygenase (RuBisCO)-like Protein fromBacillus subtilisand Photosynthetic RuBisCO
- (2009) Yohtaro Saito et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Substrate-induced Assembly ofMethanococcoides burtoniid-Ribulose-1,5-bisphosphate Carboxylase/Oxygenase Dimers into Decamers
- (2009) Hernán Alonso et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- An Improved General Amino Acid Replacement Matrix
- (2008) S. Q. Le et al. MOLECULAR BIOLOGY AND EVOLUTION
- Phylogenetic and evolutionary relationships of RubisCO and the RubisCO-like proteins and the functional lessons provided by diverse molecular forms
- (2008) F. R. Tabita et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Structure and function of Rubisco
- (2008) Inger Andersson et al. PLANT PHYSIOLOGY AND BIOCHEMISTRY
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreFind the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
Search