Third generation cephalosporin resistance in clinical non-typhoidal Salmonella enterica in Germany and emergence of bla CTX-M-harbouring pESI plasmids

Genome Sequence of an Emerging Salmonella enterica Serovar Infantis and Genomic Comparison with Other S. Infantis Strains

(2020) Emiliano Cohen et al.   Genome Biology and Evolution

Emergence of Multidrug-Resistant Salmonella enterica Subspecies enterica Serovar Infantis of Multilocus Sequence Type 2283 in German Broiler Farms

(2020) Silvia García-Soto et al.   Frontiers in Microbiology

IncI1 ST3 and IncI1 ST7 plasmids from CTX-M-1-producing Escherichia coli obtained from patients with bloodstream infections are closely related to plasmids from E. coli of animal origin

(2019) Adam Valcek et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Validating the NCBI AMRFinder Tool and Resistance Gene Database Using Antimicrobial Resistance Genotype-Phenotype Correlations in a Collection of NARMS Isolates

(2019) Michael Feldgarden et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Salmonella persisters promote the spread of antibiotic resistance plasmids in the gut

(2019) Erik Bakkeren et al.   NATURE

WGS based study of the population structure of Salmonella enterica serovar Infantis

(2019) Pernille Gymoese et al.   BMC GENOMICS

IS26-Mediated Transfer of blaNDM–1 as the Main Route of Resistance Transmission During a Polyclonal, Multispecies Outbreak in a German Hospital

(2019) Robert E. Weber et al.   Frontiers in Microbiology

Plasmids carrying antimicrobial resistance genes in Enterobacteriaceae

(2018) M Rozwandowicz et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Whole genome analyses of CMY-2-producing Escherichia coli isolates from humans, animals and food in Germany

(2018) Michael Pietsch et al.   BMC GENOMICS

Molecular characterisation of extended-spectrum β-lactamase (ESBL)-producing Escherichia coli isolates from hospital and ambulatory patients in Germany

(2017) Michael Pietsch et al.   VETERINARY MICROBIOLOGY

Identification of IncA/C Plasmid Replication and Maintenance Genes and Development of a Plasmid Multi-Locus Sequence-Typing Scheme

(2016) Steven J. Hancock et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Horizontal Transfer of the Salmonella enterica Serovar Infantis Resistance and Virulence Plasmid pESI to the Gut Microbiota of Warm-Blooded Hosts

(2016) Gili Aviv et al.   mBio

The Salmonella In Silico Typing Resource (SISTR): An Open Web-Accessible Tool for Rapidly Typing and Subtyping Draft Salmonella Genome Assemblies

(2016) Catherine E. Yoshida et al.   PLoS One

S2k-Leitlinie Gastrointestinale Infektionen und Morbus Whipple

(2015) et al.   ZEITSCHRIFT FUR GASTROENTEROLOGIE

Emergence of a Clonal Lineage of Multidrug-Resistant ESBL-Producing Salmonella Infantis Transmitted from Broilers and Broiler Meat to Humans in Italy between 2011 and 2014

(2015) Alessia Franco et al.   PLoS One

In SilicoDetection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing

(2014) Alessandra Carattoli et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Characterization of Third-Generation Cephalosporin-Resistant Escherichia coli from Bloodstream Infections in Denmark

(2014) Frank Hansen et al.   Microbial Drug Resistance

Antimicrobial Resistance Profiles and Diversity inSalmonellafrom Humans and Cattle, 2004-2011

(2014) J. A. Afema et al.   Zoonoses and Public Health

Dissemination of Cephalosporin Resistance Genes between Escherichia coli Strains from Farm Animals and Humans by Specific Plasmid Lineages

(2014) Mark de Been et al.   PLoS Genetics

Kraken: ultrafast metagenomic sequence classification using exact alignments

(2014) Derrick E Wood et al.   GENOME BIOLOGY

Extended-Spectrum-β-Lactamase-Producing Escherichia coli as Intestinal Colonizers in the German Community

(2013) Giuseppe Valenza et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

A unique megaplasmid contributes to stress tolerance and pathogenicity of an emergentSalmonella entericaserovar Infantis strain

(2013) Gili Aviv et al.   ENVIRONMENTAL MICROBIOLOGY

Plasmids and the spread of resistance

(2013) Alessandra Carattoli   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

Presence of β-lactamases in extended-spectrum-cephalosporin-resistant Salmonella enterica of 30 different serovars in Germany 2005–11

(2013) Christoph Eller et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

High prevalence of extended-spectrum- -lactamase-producing Enterobacteriaceae in organic and conventional retail chicken meat, Germany

(2012) A. Kola et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Prevalence and Characterization of Extended-Spectrum Beta-lactamases-Producing Salmonella enterica Isolates in Saragossa, Spain (2001–2008)

(2011) María Pardos de la Gándara et al.   Microbial Drug Resistance

The Global Burden of NontyphoidalSalmonellaGastroenteritis

(2010) Shannon E. Majowicz et al.   CLINICAL INFECTIOUS DISEASES

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

Extended-spectrum β-lactamases and AmpC β-lactamases in ceftiofur-resistant Salmonella enterica isolates from food and livestock obtained in Germany during 2003–07

(2009) Irene Rodríguez et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Supplement 2003–2007 (No. 47) to the White-Kauffmann-Le Minor scheme

(2009) Martine Guibourdenche et al.   RESEARCH IN MICROBIOLOGY