Gene family evolution underlies cell-type diversification in the hypothalamus of teleosts

Mapping single-cell atlases throughout Metazoa unravels cell type evolution

(2021) Alexander J Tarashansky et al.   eLife

Lamina-Dependent Stretching and Unconventional Chromosome Compartments in Early C. elegans Embryos

(2020) Ahilya N. Sawh et al.   MOLECULAR CELL

Benchmarking algorithms for gene regulatory network inference from single-cell transcriptomic data

(2020) Aditya Pratapa et al.   NATURE METHODS

Male-predominant galanin mediates androgen-dependent aggressive chases in medaka

(2020) Junpei Yamashita et al.   eLife

Adaptation to low parasite abundance affects immune investment and immunopathological responses of cavefish

(2020) Robert Peuß et al.   Nature Ecology & Evolution

Innovations present in the primate interneuron repertoire

(2020) Fenna M. Krienen et al.   NATURE

Establishing Cerebral Organoids as Models of Human-Specific Brain Evolution

(2019) Alex A. Pollen et al.   CELL

Comprehensive Integration of Single-Cell Data

(2019) Tim Stuart et al.   CELL

Evolution of neuronal types and families

(2019) Detlev Arendt et al.   CURRENT OPINION IN NEUROBIOLOGY

Metabolism‐induced oxidative stress and DNA damage selectively trigger genome instability in polyploid fungal cells

(2019) Gregory J Thomson et al.   EMBO JOURNAL

Cross-Species Analysis of Single-Cell Transcriptomic Data

(2019) Maxwell E. R. Shafer   Frontiers in Cell and Developmental Biology

Polyamines Control eIF5A Hypusination, TFEB Translation, and Autophagy to Reverse B Cell Senescence

(2019) Hanlin Zhang et al.   MOLECULAR CELL

Organoid single-cell genomic atlas uncovers human-specific features of brain development

(2019) Sabina Kanton et al.   NATURE

Heterochromatin protein 1α interacts with parallel RNA and DNA G-quadruplexes

(2019) Ruby J Roach et al.   NUCLEIC ACIDS RESEARCH

Phenotypic Convergence: Distinct Transcription Factors Regulate Common Terminal Features

(2018) Nikolaos Konstantinides et al.   CELL

Pervasive Correlated Evolution in Gene Expression Shapes Cell and Tissue Type Transcriptomes

(2018) Cong Liang et al.   Genome Biology and Evolution

Novel Genes, Ancient Genes, and Gene Co-Option Contributed to the Genetic Basis of the Radula, a Molluscan Innovation

(2018) Leon Hilgers et al.   MOLECULAR BIOLOGY AND EVOLUTION

Simultaneous single-cell profiling of lineages and cell types in the vertebrate brain

(2018) Bushra Raj et al.   NATURE BIOTECHNOLOGY

Pairwise comparisons across species are problematic when analyzing functional genomic data

(2018) Casey W. Dunn et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comprehensive phylogeny of ray-finned fishes (Actinopterygii) based on transcriptomic and genomic data

(2018) Lily C. Hughes et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolution of pallium, hippocampus, and cortical cell types revealed by single-cell transcriptomics in reptiles

(2018) Maria Antonietta Tosches et al.   SCIENCE

The dynamics of gene expression in vertebrate embryogenesis at single-cell resolution

(2018) James A. Briggs et al.   SCIENCE

The Divergent Genomes of Teleosts

(2018) Vydianathan Ravi et al.   Annual Review of Animal Biosciences

Evolution and cell-type specificity of human-specific genes preferentially expressed in progenitors of fetal neocortex

(2018) Marta Florio et al.   eLife

Developmental evolution of the forebrain in cavefish, from natural variations in neuropeptides to behavior

(2018) Alexandre Alié et al.   eLife

Hypocretin underlies the evolution of sleep loss in the Mexican cavefish

(2018) James B Jaggard et al.   eLife

Molecular Diversity and Specializations among the Cells of the Adult Mouse Brain

(2018) Arpiar Saunders et al.   CELL

Molecular Architecture of the Mouse Nervous System

(2018) Amit Zeisel et al.   CELL

The role of gene flow in rapid and repeated evolution of cave related traits in Mexican tetra, Astyanax mexicanus

(2018) Adam Herman et al.   MOLECULAR ECOLOGY

Insulin resistance in cavefish as an adaptation to a nutrient-limited environment

(2018) Misty R. Riddle et al.   NATURE

Major depression model induced by repeated and intermittent lipopolysaccharide administration: Long-lasting behavioral, neuroimmune and neuroprogressive alterations

(2018) Francisca Taciana Sousa Rodrigues et al.   JOURNAL OF PSYCHIATRIC RESEARCH

Galanin neurons in the ventrolateral preoptic area promote sleep and heat loss in mice

(2018) Daniel Kroeger et al.   Nature Communications

CNS inflammation and neurodegeneration

(2017) Tanuja Chitnis et al.   JOURNAL OF CLINICAL INVESTIGATION

Modification of feeding circuits in the evolution of social behavior

(2017) Eva K. Fischer et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Identification of a fatty acid binding protein4-UCP2 axis regulating microglial mediated neuroinflammation

(2017) Cayla M. Duffy et al.   MOLECULAR AND CELLULAR NEUROSCIENCE

SCENIC: single-cell regulatory network inference and clustering

(2017) Sara Aibar et al.   NATURE METHODS

Neuronal cell-type classification: challenges, opportunities and the path forward

(2017) Hongkui Zeng et al.   NATURE REVIEWS NEUROSCIENCE

Taxon-restricted genes at the origin of a novel trait allowing access to a new environment

(2017) M. Emília Santos et al.   SCIENCE

Expansion by whole genome duplication and evolution of the sox gene family in teleost fish

(2017) Emilien Voldoire et al.   PLoS One

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database

(2016) Jeremy Pasquier et al.   BMC GENOMICS

Molecular Diversity of Midbrain Development in Mouse, Human, and Stem Cells

(2016) Gioele La Manno et al.   CELL

Evolutionary analysis of the jacalin-related lectin family genes in 11 fishes

(2016) Jun Cao et al.   FISH & SHELLFISH IMMUNOLOGY

The origin and evolution of cell types

(2016) Detlev Arendt et al.   NATURE REVIEWS GENETICS

Mechanisms of Photoreceptor Patterning in Vertebrates and Invertebrates

(2016) Kayla Viets et al.   TRENDS IN GENETICS

Distinct genetic architecture underlies the emergence of sleep loss and prey-seeking behavior in the Mexican cavefish

(2015) Masato Yoshizawa et al.   BMC BIOLOGY

Understanding tissue expression evolution: from expression phylogeny to phylogenetic network

(2015) Xun Gu   BRIEFINGS IN BIOINFORMATICS

Neuropeptidergic Control of Sleep and Wakefulness

(2014) Constance Richter et al.   Annual Review of Neuroscience

Astyanax Transgenesis and Husbandry: How Cavefish Enters the Laboratory

(2014) Yannick Elipot et al.   Zebrafish

A mutation in the enzyme monoamine oxidase explains part of the Astyanax cavefish behavioural syndrome

(2014) Yannick Elipot et al.   Nature Communications

RDAVIDWebService: a versatile R interface to DAVID

(2013) C. Fresno et al.   BIOINFORMATICS

InterMine: a flexible data warehouse system for the integration and analysis of heterogeneous biological data

(2012) Richard N. Smith et al.   BIOINFORMATICS

The complex origin of Astyanax cavefish

(2012) Joshua B Gross   BMC EVOLUTIONARY BIOLOGY

Evolutionary history of Otophysi (Teleostei), a major clade of the modern freshwater fishes: Pangaean origin and Mesozoic radiation

(2011) Masanori Nakatani et al.   BMC EVOLUTIONARY BIOLOGY

Heterogeneous Patterns of Gene-Expression Diversification in Mammalian Gene Duplicates

(2009) D. Farre et al.   MOLECULAR BIOLOGY AND EVOLUTION

Induction of autophagy by spermidine promotes longevity

(2009) Tobias Eisenberg et al.   NATURE CELL BIOLOGY

Mapping identifiers for the integration of genomic datasets with the R/Bioconductor package biomaRt

(2009) Steffen Durinck et al.   Nature Protocols

fdrtool: a versatile R package for estimating local and tail area-based false discovery rates

(2008) K. Strimmer   BIOINFORMATICS

Evolution of vertebrate visual pigments

(2008) James K. Bowmaker   VISION RESEARCH