The earliest Denisovans and their cultural adaptation

Pleistocene sediment DNA reveals hominin and faunal turnovers at Denisova Cave

(2021) Elena I. Zavala et al.   NATURE

Zooarchaeology through the lens of collagen fingerprinting at Denisova Cave

(2021) Samantha Brown et al.   Scientific Reports

Molecular Evolutionary Genetics Analysis (MEGA) for macOS

(2020) Glen Stecher et al.   MOLECULAR BIOLOGY AND EVOLUTION

Dynamics of the Altai Paleolithic industries in the archaeological record of Denisova Cave

(2020) Michael V. Shunkov et al.   QUATERNARY INTERNATIONAL

Manual and automated preparation of single-stranded DNA libraries for the sequencing of DNA from ancient biological remains and other sources of highly degraded DNA

(2020) Marie-Theres Gansauge et al.   Nature Protocols

A high-coverage Neandertal genome from Chagyrskaya Cave

(2020) Fabrizio Mafessoni et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Compound-specific radiocarbon dating and mitochondrial DNA analysis of the Pleistocene hominin from Salkhit Mongolia

(2019) Thibaut Devièse et al.   Nature Communications

Age estimates for hominin fossils and the onset of the Upper Palaeolithic at Denisova Cave

(2019) Katerina Douka et al.   NATURE

Timing of archaic hominin occupation of Denisova Cave in southern Siberia

(2019) Zenobia Jacobs et al.   NATURE

Multiple Deeply Divergent Denisovan Ancestries in Papuans

(2019) Guy S. Jacobs et al.   CELL

A late Middle Pleistocene Denisovan mandible from the Tibetan Plateau

(2019) Fahu Chen et al.   NATURE

Nuclear DNA from two early Neandertals reveals 80,000 years of genetic continuity in Europe

(2019) Stéphane Peyrégne et al.   Science Advances

ModelTest-NG: A New and Scalable Tool for the Selection of DNA and Protein Evolutionary Models

(2019) Diego Darriba et al.   MOLECULAR BIOLOGY AND EVOLUTION

Analysis of Human Sequence Data Reveals Two Pulses of Archaic Denisovan Admixture

(2018) Sharon R. Browning et al.   CELL

Raman spectroscopy of lipid micro-residues on Middle Palaeolithic stone tools from Denisova Cave, Siberia

(2018) Luc Bordes et al.   JOURNAL OF ARCHAEOLOGICAL SCIENCE

The genome of the offspring of a Neanderthal mother and a Denisovan father

(2018) Viviane Slon et al.   NATURE

Reconstructing the genetic history of late Neanderthals

(2018) Mateja Hajdinjak et al.   NATURE

Extraction of highly degraded DNA from ancient bones, teeth and sediments for high-throughput sequencing

(2018) Nadin Rohland et al.   Nature Protocols

Direct dating of Neanderthal remains from the site of Vindija Cave and implications for the Middle to Upper Paleolithic transition

(2017) Thibaut Devièse et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Neandertal and Denisovan DNA from Pleistocene sediments

(2017) Viviane Slon et al.   SCIENCE

Ancient genomes show social and reproductive behavior of early Upper Paleolithic foragers

(2017) Martin Sikora et al.   SCIENCE

A high-coverage Neandertal genome from Vindija Cave in Croatia

(2017) Kay Prüfer et al.   SCIENCE

Deeply divergent archaic mitochondrial genome provides lower time boundary for African gene flow into Neanderthals

(2017) Cosimo Posth et al.   Nature Communications

A fourth Denisovan individual

(2017) Viviane Slon et al.   Science Advances

Finding Britain's last hunter-gatherers: A new biomolecular approach to ‘unidentifiable’ bone fragments utilising bone collagen

(2016) Sophy Charlton et al.   JOURNAL OF ARCHAEOLOGICAL SCIENCE

The genetic history of Ice Age Europe

(2016) Qiaomei Fu et al.   NATURE

Palaeoproteomic evidence identifies archaic hominins associated with the Châtelperronian at the Grotte du Renne

(2016) Frido Welker et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The end of the Lower Paleolithic in the Levant: The Acheulo-Yabrudian lithic technology at Misliya Cave, Israel

(2016) Yossi Zaidner et al.   QUATERNARY INTERNATIONAL

Excavating Neandertal and Denisovan DNA from the genomes of Melanesian individuals

(2016) B. Vernot et al.   SCIENCE

Effect of X-ray irradiation on ancient DNA in sub-fossil bones – Guidelines for safe X-ray imaging

(2016) Alexander Immel et al.   Scientific Reports

Neandertal cannibalism and Neandertal bones used as tools in Northern Europe

(2016) Hélène Rougier et al.   Scientific Reports

Reducing microbial and human contamination in DNA extractions from ancient bones and teeth

(2015) Petra Korlević et al.   BIOTECHNIQUES

An early modern human from Romania with a recent Neanderthal ancestor

(2015) Qiaomei Fu et al.   NATURE

Nuclear and mitochondrial DNA sequences from two Denisovan individuals

(2015) Susanna Sawyer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Selective enrichment of damaged DNA molecules for ancient genome sequencing

(2014) Marie-Theres Gansauge et al.   GENOME RESEARCH

Genome sequence of a 45,000-year-old modern human from western Siberia

(2014) Qiaomei Fu et al.   NATURE

leeHom: adaptor trimming and merging for Illumina sequencing reads

(2014) Gabriel Renaud et al.   NUCLEIC ACIDS RESEARCH

Separating endogenous ancient DNA from modern day contamination in a Siberian Neandertal

(2014) Pontus Skoglund et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Revised Timescale for Human Evolution Based on Ancient Mitochondrial Genomes

(2013) Qiaomei Fu et al.   CURRENT BIOLOGY

Species identification of archaeological marine mammals using collagen fingerprinting

(2013) M. Buckley et al.   JOURNAL OF ARCHAEOLOGICAL SCIENCE

A mitochondrial genome sequence of a hominin from Sima de los Huesos

(2013) Matthias Meyer et al.   NATURE

The complete genome sequence of a Neanderthal from the Altai Mountains

(2013) Kay Prüfer et al.   NATURE

DNA analysis of an early modern human from Tianyuan Cave, China

(2013) Q. Fu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A NEW DATE FOR THE NEANDERTHALS FROM EL SIDRÓN CAVE (ASTURIAS, NORTHERN SPAIN)*

(2012) R. E. WOOD et al.   ARCHAEOMETRY

Accurate Model Selection of Relaxed Molecular Clocks in Bayesian Phylogenetics

(2012) Guy Baele et al.   MOLECULAR BIOLOGY AND EVOLUTION

Improving the Accuracy of Demographic and Molecular Clock Model Comparison While Accommodating Phylogenetic Uncertainty

(2012) Guy Baele et al.   MOLECULAR BIOLOGY AND EVOLUTION

A High-Coverage Genome Sequence from an Archaic Denisovan Individual

(2012) M. Meyer et al.   SCIENCE

Denisova Admixture and the First Modern Human Dispersals into Southeast Asia and Oceania

(2011) David Reich et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

(2011) F. Sievers et al.   Molecular Systems Biology

Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform

(2011) Martin Kircher et al.   NUCLEIC ACIDS RESEARCH

A novel and non-destructive approach for ZooMS analysis: ammonium bicarbonate buffer extraction

(2011) Nienke Laura van Doorn et al.   Archaeological and Anthropological Sciences

Collagen fingerprinting of archaeological bone and teeth remains from Domuztepe, South Eastern Turkey

(2011) Mike Buckley et al.   Archaeological and Anthropological Sciences

The complete mitochondrial DNA genome of an unknown hominin from southern Siberia

(2010) Johannes Krause et al.   NATURE

Genetic history of an archaic hominin group from Denisova Cave in Siberia

(2010) David Reich et al.   NATURE

Multiplexed DNA Sequence Capture of Mitochondrial Genomes Using PCR Products

(2010) Tomislav Maricic et al.   PLoS One

A Draft Sequence of the Neandertal Genome

(2010) R. E. Green et al.   SCIENCE

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Species identification by analysis of bone collagen using matrix-assisted laser desorption/ionisation time-of-flight mass spectrometry

(2009) Michael Buckley et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY

Targeted Retrieval and Analysis of Five Neandertal mtDNA Genomes

(2009) A. W. Briggs et al.   SCIENCE

A Complete Neandertal Mitochondrial Genome Sequence Determined by High-Throughput Sequencing

(2008) Richard E. Green et al.   CELL

mMass data miner: an open source alternative for mass spectrometric data analysis

(2008) Martin Strohalm et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY