Manual and automated preparation of single-stranded DNA libraries for the sequencing of DNA from ancient biological remains and other sources of highly degraded DNA
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Title
Manual and automated preparation of single-stranded DNA libraries for the sequencing of DNA from ancient biological remains and other sources of highly degraded DNA
Authors
Keywords
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Journal
Nature Protocols
Volume 15, Issue 8, Pages 2279-2300
Publisher
Springer Science and Business Media LLC
Online
2020-07-02
DOI
10.1038/s41596-020-0338-0
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- New insights on single-stranded versus double-stranded DNA library preparation for ancient DNA
- (2015) Nathan Wales et al. BIOTECHNIQUES
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- (2012) Jesse Dabney et al. BIOTECHNIQUES
- A High-Coverage Genome Sequence from an Archaic Denisovan Individual
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- Setting the stage – Building and working in an ancient DNA laboratory
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- Targeted Investigation of the Neandertal Genome by Array-Based Sequence Capture
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