Investigating the Reciprocal Interrelationships among the Ruminal Microbiota, Metabolome, and Mastitis in Early Lactating Holstein Dairy Cows

Rumen microbiome structure and metabolites activity in dairy cows with clinical and subclinical mastitis

(2021) Yue Wang et al.   Journal of Animal Science and Biotechnology

MetaboAnalyst 5.0: narrowing the gap between raw spectra and functional insights

(2021) Zhiqiang Pang et al.   NUCLEIC ACIDS RESEARCH

Inflammatory diseases in dairy cows: Risk factors and associations with pregnancy after embryo transfer

(2020) I.N.F. Edelhoff et al.   JOURNAL OF DAIRY SCIENCE

The Rumen Specific Bacteriome in Dry Dairy Cows and Its Possible Relationship with Phenotypes

(2020) Shih-Te Chuang et al.   Animals

Targeting gut microbiota as a possible therapy for mastitis

(2019) Xiaoyu Hu et al.   EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES

Long-term effects of postpartum clinical disease on milk production, reproduction, and culling of dairy cows

(2019) M.R. Carvalho et al.   JOURNAL OF DAIRY SCIENCE

Somatic cell count and type of intramammary infection impacts fertility from in vitro produced embryo transfer

(2018) L.F.S.P. Barbosa et al.   THERIOGENOLOGY

Microbiome and butyrate production are altered in the gut of rats fed a glycated fish protein diet

(2018) Kaining Han et al.   Journal of Functional Foods

Assessment of Rumen Microbiota from a Large Dairy Cattle Cohort Reveals the Pan and Core Bacteriomes Contributing to Varied Phenotypes

(2018) Mingyuan Xue et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Diet Influences Early Microbiota Development in Dairy Calves without Long-Term Impacts on Milk Production

(2018) Kimberly A. Dill-McFarland et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Invited review: Microbiota of the bovine udder: Contributing factors and potential implications for udder health and mastitis susceptibility

(2018) Hooman Derakhshani et al.   JOURNAL OF DAIRY SCIENCE

Composition of Rumen Bacterial Community in Dairy Cows With Different Levels of Somatic Cell Counts

(2018) Yifan Zhong et al.   Frontiers in Microbiology

Cow-to-mouse fecal transplantations suggest intestinal microbiome as one cause of mastitis

(2018) Chen Ma et al.   Microbiome

Sodium Butyrate Ameliorates High-Concentrate Diet-Induced Inflammation in the Rumen Epithelium of Dairy Goats

(2017) Hongyu Dai et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Changes in Microbiota in Rumen Digesta and Feces Due to a Grain-Based Subacute Ruminal Acidosis (SARA) Challenge

(2017) Jan C. Plaizier et al.   MICROBIAL ECOLOGY

Dysbiosis Signatures of Gut Microbiota Along the Sequence from Healthy, Young Patients to Those with Overweight and Obesity

(2017) Renyuan Gao et al.   Obesity

Assessing the impact of rumen microbial communities on methane emissions and production traits in Holstein cows in a tropical climate

(2017) Camila S. Cunha et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

A High Grain Diet Dynamically Shifted the Composition of Mucosa-Associated Microbiota and Induced Mucosal Injuries in the Colon of Sheep

(2017) Yue Wang et al.   Frontiers in Microbiology

Bacterial Composition and Diversity in Breast Milk Samples from Mothers Living in Taiwan and Mainland China

(2017) Shiao-Wen Li et al.   Frontiers in Microbiology

Illumina Sequencing Approach to Characterize Thiamine Metabolism Related Bacteria and the Impacts of Thiamine Supplementation on Ruminal Microbiota in Dairy Cows Fed High-Grain Diets

(2017) Xiaohua Pan et al.   Frontiers in Microbiology

The ruminal microbiome associated with methane emissions from ruminant livestock

(2017) Ilma Tapio et al.   Journal of Animal Science and Biotechnology

Propionate Protects against Lipopolysaccharide-Induced Mastitis in Mice by Restoring Blood–Milk Barrier Disruption and Suppressing Inflammatory Response

(2017) Jingjing Wang et al.   Frontiers in Immunology

A review of the immunomodulatory role of dietary tryptophan in livestock and poultry

(2016) Miaomiao Bai et al.   AMINO ACIDS

Carryover effect of postpartum inflammatory diseases on developmental biology and fertility in lactating dairy cows

(2016) E.S. Ribeiro et al.   JOURNAL OF DAIRY SCIENCE

Effects of Subclinical Mastitis on Serum Estradiol and Tumour Necrosis Factor Alpha Levels During Estrus in Dairy Cows

(2016) Bayazıt MUSAL et al.   Kafkas Universitesi Veteriner Fakultesi Dergisi

Bovine mastitis may be associated with the deprivation of gut Lactobacillus

(2016) C. Ma et al.   Beneficial Microbes

Bovine Teat Microbiome Analysis Revealed Reduced Alpha Diversity and Significant Changes in Taxonomic Profiles in Quarters with a History of Mastitis

(2016) Hélène Falentin et al.   Frontiers in Microbiology

Rumen metagenome and metatranscriptome analyses of low methane yield sheep reveals a Sharpea-enriched microbiome characterised by lactic acid formation and utilisation

(2016) Janine Kamke et al.   Microbiome

Antibiotics, Pediatric Dysbiosis, and Disease

(2015) Pajau Vangay et al.   Cell Host & Microbe

Associative patterns among anaerobic fungi, methanogenic archaea, and bacterial communities in response to changes in diet and age in the rumen of dairy cows

(2015) Sanjay Kumar et al.   Frontiers in Microbiology

Pectin Induces an In Vitro Rumen Microbial Population Shift Attributed to the Pectinolytic Treponema Group

(2014) Jing Liu et al.   CURRENT MICROBIOLOGY

Potential Role of the Bovine Rumen Microbiome in Modulating Milk Composition and Feed Efficiency

(2014) Elie Jami et al.   PLoS One

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

(2012) Nicholas A Bokulich et al.   NATURE METHODS

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Composition and Similarity of Bovine Rumen Microbiota across Individual Animals

(2012) Elie Jami et al.   PLoS One

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

(2011) B. J. Haas et al.   GENOME RESEARCH

Molecular Epidemiology of Mastitis Pathogens of Dairy Cattle and Comparative Relevance to Humans

(2011) Ruth N. Zadoks et al.   JOURNAL OF MAMMARY GLAND BIOLOGY AND NEOPLASIA

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

Pantothenic acid in ruminant nutrition: a review

(2010) V. Ragaller et al.   JOURNAL OF ANIMAL PHYSIOLOGY AND ANIMAL NUTRITION

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Defining Postpartum Uterine Disease and the Mechanisms of Infection and Immunity in the Female Reproductive Tract in Cattle1

(2009) I. Martin Sheldon et al.   BIOLOGY OF REPRODUCTION