Bovine Teat Microbiome Analysis Revealed Reduced Alpha Diversity and Significant Changes in Taxonomic Profiles in Quarters with a History of Mastitis

Ruminal Bacterial Community Composition in Dairy Cows Is Dynamic over the Course of Two Lactations and Correlates with Feed Efficiency

(2015) Kelsea A. Jewell et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Early life microbial colonization of the gut and intestinal development differ between genetically divergent broiler lines

(2015) Dirkjan Schokker et al.   BMC GENOMICS

Qualitative analysis of the vaginal microbiota of healthy cattle and cattle with genital-tract disease

(2015) N.F. Rodrigues et al.   GENETICS AND MOLECULAR RESEARCH

Abundance of ruminal bacteria, epithelial gene expression, and systemic biomarkers of metabolism and inflammation are altered during the peripartal period in dairy cows

(2015) A. Minuti et al.   JOURNAL OF DAIRY SCIENCE

Revisiting bovine pyometra—New insights into the disease using a culture-independent deep sequencing approach

(2015) Lif Rødtness Vesterby Knudsen et al.   VETERINARY MICROBIOLOGY

The pig gut microbial diversity: Understanding the pig gut microbial ecology through the next generation high throughput sequencing

(2015) Hyeun Bum Kim et al.   VETERINARY MICROBIOLOGY

Network analysis suggests a potentially ‘evil’ alliance of opportunistic pathogens inhibited by a cooperative network in human milk bacterial communities

(2015) Zhanshan (Sam) Ma et al.   Scientific Reports

Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range

(2015) Gemma Henderson et al.   Scientific Reports

Associative patterns among anaerobic fungi, methanogenic archaea, and bacterial communities in response to changes in diet and age in the rumen of dairy cows

(2015) Sanjay Kumar et al.   Frontiers in Microbiology

Redundancy, resilience, and host specificity of the ruminal microbiota: implications for engineering improved ruminal fermentations

(2015) Paul J. Weimer   Frontiers in Microbiology

Rumen Microbiome from Steers Differing in Feed Efficiency

(2015) Phillip R. Myer et al.   PLoS One

Lactic Acid Bacteria Isolated from Bovine Mammary Microbiota: Potential Allies against Bovine Mastitis

(2015) Damien S. Bouchard et al.   PLoS One

Does Dietary Mitigation of Enteric Methane Production Affect Rumen Function and Animal Productivity in Dairy Cows?

(2015) Jolien B. Veneman et al.   PLoS One

Microbial biodiversity of the liquid fraction of rumen content from lactating cows

(2014) M. Sandri et al.   Animal

Antibiotic treatments and microbes in the gut

(2014) Sandra Macfarlane   ENVIRONMENTAL MICROBIOLOGY

Characterization of bacterial community of raw milk from dairy cows during subacute ruminal acidosis challenge by high-throughput sequencing

(2014) Ruiyang Zhang et al.   JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE

Potential Role of the Bovine Rumen Microbiome in Modulating Milk Composition and Feed Efficiency

(2014) Elie Jami et al.   PLoS One

Microbiota of Cow’s Milk; Distinguishing Healthy, Sub-Clinically and Clinically Diseased Quarters

(2014) Georgios Oikonomou et al.   PLoS One

Dialogue between skin microbiota and immunity

(2014) Y. Belkaid et al.   SCIENCE

Shifting the paradigm from pathogens to pathobiome: new concepts in the light of meta-omics

(2014) Muriel Vayssier-Taussat et al.   Frontiers in Cellular and Infection Microbiology

Bacterial communities in the rumen of Holstein heifers differ when fed orchardgrass as pasture vs. hay

(2014) Riazuddin Mohammed et al.   Frontiers in Microbiology

Vertical mother-neonate transfer of maternal gut bacteria via breastfeeding

(2013) Ted Jost et al.   ENVIRONMENTAL MICROBIOLOGY

Unraveling the microbiota of teat apices of clinically healthy lactating dairy cows, with special emphasis on coagulase-negative staphylococci

(2013) G. Braem et al.   JOURNAL OF DAIRY SCIENCE

The gut microbiome: the role of a virtual organ in the endocrinology of the host

(2013) James M Evans et al.   JOURNAL OF ENDOCRINOLOGY

Assessing the Consequences of Denoising Marker-Based Metagenomic Data

(2013) John M. Gaspar et al.   PLoS One

Bacterial Community Profiling of Milk Samples as a Means to Understand Culture-Negative Bovine Clinical Mastitis

(2013) Joanna S. Kuehn et al.   PLoS One

Effect of DNA Extraction Methods and Sampling Techniques on the Apparent Structure of Cow and Sheep Rumen Microbial Communities

(2013) Gemma Henderson et al.   PLoS One

Pathogen profile of clinical mastitis in Irish milk-recording herds reveals a complex aetiology

(2013) O. M. Keane et al.   VETERINARY RECORD

Lactic acid bacteria from raw milk as potentially beneficial strains to prevent bovine mastitis

(2012) M. Carolina Espeche et al.   ANAEROBE

Inhibition of Staphylococcus aureus Invasion into Bovine Mammary Epithelial Cells by Contact with Live Lactobacillus casei

(2012) Damien S. Bouchard et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Milk microbiome signatures of subclinical mastitis-affected cattle analysed by shotgun sequencing

(2012) V.D. Bhatt et al.   JOURNAL OF APPLIED MICROBIOLOGY

Epidemiology of coagulase-negative staphylococci intramammary infection in dairy cattle and the effect of bacteriological culture misclassification

(2012) S. Dufour et al.   JOURNAL OF DAIRY SCIENCE

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

Composition and Similarity of Bovine Rumen Microbiota across Individual Animals

(2012) Elie Jami et al.   PLoS One

Microbial Diversity of Bovine Mastitic Milk as Described by Pyrosequencing of Metagenomic 16s rDNA

(2012) Georgios Oikonomou et al.   PLoS One

Diversity and Succession of Bacterial Communities in the Uterine Fluid of Postpartum Metritic, Endometritic and Healthy Dairy Cows

(2012) Thiago M. A. Santos et al.   PLoS One

Investigation of postpartum dairy cows’ uterine microbial diversity using metagenomic pyrosequencing of the 16S rRNA gene

(2012) V.S. Machado et al.   VETERINARY MICROBIOLOGY

The Microbiota of the Vagina and Its Influence on Women’s Health and Disease

(2011) David H. Martin   AMERICAN JOURNAL OF THE MEDICAL SCIENCES

Costs of clinical mastitis with special reference to premature culling

(2011) A.-M. Heikkilä et al.   JOURNAL OF DAIRY SCIENCE

Characterization of the Diversity and Temporal Stability of Bacterial Communities in Human Milk

(2011) Katherine M. Hunt et al.   PLoS One

Culture-independent exploration of the teat apex microbiota of dairy cows reveals a wide bacterial species diversity

(2011) Gorik Braem et al.   VETERINARY MICROBIOLOGY

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

Metagenomic analysis of the uterine bacterial microbiota in healthy and metritic postpartum dairy cows

(2010) T.M.A. Santos et al.   JOURNAL OF DAIRY SCIENCE

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Vaginal microbiome of reproductive-age women

(2010) J. Ravel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Advances in the design of probiotic products for the prevention of major diseases in dairy cattle

(2008) M. Elena Fátima Nader-Macías et al.   JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY