Associative patterns among anaerobic fungi, methanogenic archaea, and bacterial communities in response to changes in diet and age in the rumen of dairy cows

Influence of anaerobic fungal administration on growth, rumen fermentation and nutrient digestion in female buffalo calves

(2016) J. Sehgal et al.   JOURNAL OF ANIMAL AND FEED SCIENCES

Potential functional gene diversity involved in methanogenesis and methanogenic community structure in Indian buffalo (Bubalus bubalis) rumen

(2015) Krishna M. Singh et al.   JOURNAL OF APPLIED GENETICS

Role of live microbial feed supplements with reference to anaerobic fungi in ruminant productivity: A review

(2015) Anil K Puniya et al.   Journal of Integrative Agriculture

Prepartum and Postpartum Rumen Fluid Microbiomes: Characterization and Correlation with Production Traits in Dairy Cows

(2014) Fabio S. Lima et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Study of methanogen communities associated with different rumen protozoal populations

(2014) Alejandro Belanche et al.   FEMS MICROBIOLOGY ECOLOGY

Anaerobic fungi (phylumNeocallimastigomycota): advances in understanding their taxonomy, life cycle, ecology, role and biotechnological potential

(2014) Robert J. Gruninger et al.   FEMS MICROBIOLOGY ECOLOGY

Temporal dynamics in the ruminal microbiome of dairy cows during the transition period

(2014) D. W. Pitta et al.   JOURNAL OF ANIMAL SCIENCE

Potential Role of the Bovine Rumen Microbiome in Modulating Milk Composition and Feed Efficiency

(2014) Elie Jami et al.   PLoS One

Early Methanogenic Colonisation in the Faeces of Meishan and Yorkshire Piglets as Determined by Pyrosequencing Analysis

(2014) Yong Su et al.   ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL

Temporal dynamics of fibrolytic and methanogenic rumen microorganisms during in situ incubation of switchgrass determined by 16S rRNA gene profiling

(2014) Hailan Piao et al.   Frontiers in Microbiology

RIM-DB: a taxonomic framework for community structure analysis of methanogenic archaea from the rumen and other intestinal environments

(2014) Henning Seedorf et al.   PeerJ

Determining the culturability of the rumen bacterial microbiome

(2014) Christopher J. Creevey et al.   Microbial Biotechnology

Exploring the bovine rumen bacterial community from birth to adulthood

(2013) Elie Jami et al.   ISME Journal

Simultaneous Amplicon Sequencing to Explore Co-Occurrence Patterns of Bacterial, Archaeal and Eukaryotic Microorganisms in Rumen Microbial Communities

(2013) Sandra Kittelmann et al.   PLoS One

Archaea and Fungi of the Human Gut Microbiome: Correlations with Diet and Bacterial Residents

(2013) Christian Hoffmann et al.   PLoS One

Methylotrophic methanogenic Thermoplasmata implicated in reduced methane emissions from bovine rumen

(2013) Morten Poulsen et al.   Nature Communications

Microbial profiles, in vitro gas production and dry matter digestibility based on various ratios of roughage to concentrate

(2012) Sanjay Kumar et al.   ANNALS OF MICROBIOLOGY

Rumen bacterial, archaeal, and fungal diversity of dairy cows in response to ingestion of lauric or myristic acid1

(2012) A. N. Hristov et al.   JOURNAL OF ANIMAL SCIENCE

Responses of anaerobic rumen fungal diversity (phylum Neocallimastigomycota) to changes in bovine diet

(2012) B. Boots et al.   JOURNAL OF APPLIED MICROBIOLOGY

Primiparous and multiparous females differ in mammary gland alveolar development: implications for milk production

(2012) S. L. C. Lang et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Composition and Similarity of Bovine Rumen Microbiota across Individual Animals

(2012) Elie Jami et al.   PLoS One

A Proposed Taxonomy of Anaerobic Fungi (Class Neocallimastigomycetes) Suitable for Large-Scale Sequence-Based Community Structure Analysis

(2012) Sandra Kittelmann et al.   PLoS One

Next Generation Sequencing to Define Prokaryotic and Fungal Diversity in the Bovine Rumen

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Isolation and characterization of methanogens from rumen of Murrah buffalo

(2011) Sanjay Kumar et al.   ANNALS OF MICROBIOLOGY

Differences in the Rumen Methanogen Populations of Lactating Jersey and Holstein Dairy Cows under the Same Diet Regimen

(2011) Erin E. King et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

D1/D2 Domain of Large-Subunit Ribosomal DNA for Differentiation of Orpinomyces spp.

(2011) Sumit S. Dagar et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Characterization of the rumen microbiota of pre-ruminant calves using metagenomic tools

(2011) Robert W. Li et al.   ENVIRONMENTAL MICROBIOLOGY

Methanogen community structure in the rumens of farmed sheep, cattle and red deer fed different diets

(2011) Jeyamalar Jeyanathan et al.   FEMS MICROBIOLOGY ECOLOGY

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

(2011) Daniel McDonald et al.   ISME Journal

Anaerobic fungi: Neocallimastigomycota

(2011) Gareth W Griffith et al.   IMA Fungus

Influence of hydrogen on rumen methane formation and fermentation balances through microbial growth kinetics and fermentation thermodynamics

(2010) Peter H. Janssen   ANIMAL FEED SCIENCE AND TECHNOLOGY

Characterization of Variation in Rumen Methanogenic Communities under Different Dietary and Host Feed Efficiency Conditions, as Determined by PCR-Denaturing Gradient Gel Electrophoresis Analysis

(2010) M. Zhou et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Diversity of anaerobic fungi within cow manure determined by ITS1 analysis

(2010) K. Fliegerová et al.   FOLIA MICROBIOLOGICA

Phylogenetic diversity and community structure of anaerobic gut fungi (phylum Neocallimastigomycota) in ruminant and non-ruminant herbivores

(2010) Audra S Liggenstoffer et al.   ISME Journal

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Diversity of anaerobic gut fungal populations analysed using ribosomal ITS1 sequences in faeces of wild and domesticated herbivores

(2009) Matthew J. Nicholson et al.   ANAEROBE

Assessment of the Microbial Ecology of Ruminal Methanogens in Cattle with Different Feed Efficiencies

(2009) M. Zhou et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Diversity of anaerobic fungal populations in cattle revealed by selective enrichment culture using different carbon sources

(2009) G.W. Griffith et al.   Fungal Ecology

Technical note: Bacterial diversity and fermentation end products in rumen fluid samples collected via oral lavage or rumen cannula

(2009) S. L. Lodge-Ivey et al.   JOURNAL OF ANIMAL SCIENCE

Dominance ofMethanomicrobiumphylotype in methanogen population present in Murrah buffaloes (Bubalus bubalis)

(2009) P.P. Chaudhary et al.   LETTERS IN APPLIED MICROBIOLOGY

Factors affecting rumen methanogens and methane mitigation strategies

(2009) Sanjay Kumar et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Structure of the Archaeal Community of the Rumen

(2008) P. H. Janssen et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Dynamics of initial colonization of nonconserved perennial ryegrass by anaerobic fungi in the bovine rumen

(2008) Joan E. Edwards et al.   FEMS MICROBIOLOGY ECOLOGY

Molecular Diversity of the Rumen Microbiome of Norwegian Reindeer on Natural Summer Pasture

(2008) Monica A. Sundset et al.   MICROBIAL ECOLOGY

The Macaque Gut Microbiome in Health, Lentiviral Infection, and Chronic Enterocolitis

(2008) Philip McKenna et al.   PLoS Pathogens